Analysis of interatomic Contacts of Structural Units in PDB entry:
7YNY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YNY entry

There are 8 chains in PDB entry 7YNY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 48	LEU 379
B	LYS 48	LEU 379
C	LYS 48	LEU 379
D	LYS 48	LEU 379
E	LYS 48	LEU 379
F	LYS 48	LEU 379
G	LYS 48	LEU 379
H	LYS 48	LEU 379

There are 49 helices in PDB entry 7YNY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	88	95	Right-handed alpha
Helix 2	AA2	A	135	140	Right-handed alpha
Helix 3	AA3	A	189	196	Right-handed alpha
Helix 4	AA4	A	203	214	Right-handed alpha
Helix 5	AA5	A	253	258	Right-handed alpha
Helix 6	AA6	A	323	336	Right-handed alpha
Helix 7	AA7	A	336	343	Right-handed alpha
Helix 8	AA8	B	88	95	Right-handed alpha
Helix 9	AA9	B	135	140	Right-handed alpha
Helix 10	AB1	B	189	196	Right-handed alpha
Helix 11	AB2	B	203	214	Right-handed alpha
Helix 12	AB3	B	253	260	Right-handed alpha
Helix 13	AB4	B	321	336	Right-handed alpha
Helix 14	AB5	B	336	343	Right-handed alpha
Helix 15	AB6	C	88	93	Right-handed alpha
Helix 16	AB7	C	135	141	Right-handed alpha
Helix 17	AB8	C	188	196	Right-handed alpha
Helix 18	AB9	C	203	213	Right-handed alpha
Helix 19	AC1	C	321	335	Right-handed alpha
Helix 20	AC2	C	336	343	Right-handed alpha
Helix 21	AC3	D	88	95	Right-handed alpha
Helix 22	AC4	D	135	141	Right-handed alpha
Helix 23	AC5	D	189	195	Right-handed alpha
Helix 24	AC6	D	203	212	Right-handed alpha
Helix 25	AC7	D	321	335	Right-handed alpha
Helix 26	AC8	D	336	343	Right-handed alpha
Helix 27	AC9	E	88	95	Right-handed alpha
Helix 28	AD1	E	135	140	Right-handed alpha
Helix 29	AD2	E	189	195	Right-handed alpha
Helix 30	AD3	E	203	214	Right-handed alpha
Helix 31	AD4	E	252	258	Right-handed alpha
Helix 32	AD5	E	321	343	Right-handed alpha
Helix 33	AD6	F	90	95	Right-handed alpha
Helix 34	AD7	F	135	140	Right-handed alpha
Helix 35	AD8	F	189	196	Right-handed alpha
Helix 36	AD9	F	203	213	Right-handed alpha
Helix 37	AE1	F	255	259	Right-handed 310
Helix 38	AE2	F	321	343	Right-handed alpha
Helix 39	AE3	G	88	95	Right-handed alpha
Helix 40	AE4	G	135	141	Right-handed alpha
Helix 41	AE5	G	188	194	Right-handed alpha
Helix 42	AE6	G	203	214	Right-handed alpha
Helix 43	AE7	G	253	260	Right-handed alpha
Helix 44	AE8	G	321	343	Right-handed alpha
Helix 45	AE9	H	88	95	Right-handed alpha
Helix 46	AF1	H	135	140	Right-handed alpha
Helix 47	AF2	H	189	196	Right-handed alpha
Helix 48	AF3	H	203	214	Right-handed alpha
Helix 49	AF4	H	322	343	Right-handed alpha

There are 30 sheets in PDB entry 7YNY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	66	first strand
Strand 2	A	69	77	anti-parallel
Strand 3	A	82	87	anti-parallel
Strand 4	A	111	117	parallel
Strand 5	A	101	108	anti-parallel
Strand 6	A	51	66	anti-parallel
Strand 7	D	51	65	anti-parallel
Strand 8	D	100	108	anti-parallel
Strand 9	D	111	117	anti-parallel
Strand 10	D	81	87	parallel
Strand 11	D	70	78	anti-parallel
Strand 12	D	51	65	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	134	first strand
Strand 2	A	162	172	parallel
Strand 3	A	178	188	anti-parallel
Strand 4	A	235	246	parallel
Strand 5	A	218	227	anti-parallel
Strand 6	A	143	155	anti-parallel
Strand 7	A	162	172	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	277	first strand
Strand 2	A	346	354	anti-parallel
Strand 3	A	362	371	anti-parallel
Strand 4	A	376	378	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	288	first strand
Strand 2	A	293	300	anti-parallel
Strand 3	A	305	311	anti-parallel

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There are 12 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	65	first strand
Strand 2	B	70	77	anti-parallel
Strand 3	B	82	86	anti-parallel
Strand 4	B	112	119	parallel
Strand 5	B	100	107	anti-parallel
Strand 6	B	51	65	anti-parallel
Strand 7	G	53	65	anti-parallel
Strand 8	G	100	106	anti-parallel
Strand 9	G	113	119	anti-parallel
Strand 10	G	81	87	parallel
Strand 11	G	70	78	anti-parallel
Strand 12	G	53	65	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	130	first strand
Strand 2	B	133	134	first strand
Strand 3	B	143	155	parallel
Strand 4	B	162	172	anti-parallel
Strand 5	B	178	188	anti-parallel
Strand 6	B	218	222	anti-parallel
Strand 7	B	224	229	anti-parallel
Strand 8	B	232	237	anti-parallel
Strand 9	B	243	246	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	277	first strand
Strand 2	B	346	354	anti-parallel
Strand 3	B	362	371	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	288	first strand
Strand 2	B	293	300	anti-parallel
Strand 3	B	305	311	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	82	87	first strand
Strand 2	F	70	77	anti-parallel
Strand 3	F	60	65	anti-parallel
Strand 4	C	51	66	anti-parallel
Strand 5	C	100	108	anti-parallel
Strand 6	C	111	119	anti-parallel
Strand 7	C	81	87	parallel
Strand 8	C	69	78	anti-parallel
Strand 9	C	51	66	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	134	first strand
Strand 2	C	147	155	first strand
Strand 3	C	163	172	anti-parallel
Strand 4	C	178	187	anti-parallel
Strand 5	C	218	222	anti-parallel
Strand 6	C	243	246	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	144	first strand
Strand 2	C	224	227	anti-parallel
Strand 3	C	235	237	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	272	278	first strand
Strand 2	C	346	354	anti-parallel
Strand 3	C	363	371	anti-parallel
Strand 4	C	376	379	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	288	first strand
Strand 2	C	293	300	anti-parallel
Strand 3	C	305	311	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	134	first strand
Strand 2	D	143	155	first strand
Strand 3	D	162	172	anti-parallel
Strand 4	D	178	188	anti-parallel
Strand 5	D	196	197	first strand
Strand 6	D	218	229	anti-parallel
Strand 7	D	232	246	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	272	278	first strand
Strand 2	D	346	354	anti-parallel
Strand 3	D	362	371	anti-parallel
Strand 4	D	376	378	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	283	288	first strand
Strand 2	D	293	300	anti-parallel
Strand 3	D	305	308	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	51	54	first strand
Strand 2	E	102	108	anti-parallel
Strand 3	E	111	118	anti-parallel

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There are 9 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	81	87	first strand
Strand 2	E	70	78	anti-parallel
Strand 3	E	61	65	anti-parallel
Strand 4	H	51	65	anti-parallel
Strand 5	H	100	108	anti-parallel
Strand 6	H	111	117	anti-parallel
Strand 7	H	82	87	parallel
Strand 8	H	70	77	anti-parallel
Strand 9	H	51	65	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	132	134	first strand
Strand 2	E	143	155	first strand
Strand 3	E	162	172	anti-parallel
Strand 4	E	178	188	anti-parallel
Strand 5	E	218	228	anti-parallel
Strand 6	E	234	237	anti-parallel
Strand 7	E	244	246	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	272	278	first strand
Strand 2	E	346	354	anti-parallel
Strand 3	E	362	371	anti-parallel
Strand 4	E	376	379	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	283	288	first strand
Strand 2	E	293	300	anti-parallel
Strand 3	E	305	311	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	51	57	first strand
Strand 2	F	100	108	anti-parallel
Strand 3	F	111	118	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	132	134	first strand
Strand 2	F	143	144	first strand
Strand 3	F	147	155	first strand
Strand 4	F	162	172	anti-parallel
Strand 5	F	178	188	anti-parallel
Strand 6	F	218	227	anti-parallel
Strand 7	F	235	246	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	272	277	first strand
Strand 2	F	346	354	anti-parallel
Strand 3	F	362	371	anti-parallel
Strand 4	F	376	378	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	283	288	first strand
Strand 2	F	293	300	anti-parallel
Strand 3	F	305	311	anti-parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	133	134	first strand
Strand 2	G	143	155	first strand
Strand 3	G	163	172	anti-parallel
Strand 4	G	178	187	anti-parallel
Strand 5	G	218	227	anti-parallel
Strand 6	G	235	246	anti-parallel
Strand 7	G	262	265	parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	272	278	first strand
Strand 2	G	283	288	first strand
Strand 3	G	293	300	anti-parallel
Strand 4	G	305	311	anti-parallel
Strand 5	G	346	354	anti-parallel
Strand 6	G	362	371	anti-parallel
Strand 7	G	376	378	anti-parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	132	134	first strand
Strand 2	H	143	155	first strand
Strand 3	H	162	172	anti-parallel
Strand 4	H	178	188	anti-parallel
Strand 5	H	218	227	anti-parallel
Strand 6	H	235	237	anti-parallel
Strand 7	H	243	246	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	272	278	first strand
Strand 2	H	346	354	anti-parallel
Strand 3	H	362	371	anti-parallel
Strand 4	H	376	378	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	283	288	first strand
Strand 2	H	293	300	anti-parallel
Strand 3	H	305	311	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YNY

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YNY