Analysis of interatomic Contacts of Structural Units in PDB entry:
7YNZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YNZ entry

There are 8 chains in PDB entry 7YNZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 13	ASP 1056
B	ALA 40	ALA 301
C	PRO 13	ASP 1056
D	ALA 40	ALA 301
E	PRO 13	ASP 1056
F	ALA 40	ALA 301
G	PRO 13	ASP 1056
H	ALA 40	ALA 301

There are203 helices in PDB entry 7YNZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	49	Right-handed alpha
Helix 2	AA2	A	92	106	Right-handed alpha
Helix 3	AA3	A	109	134	Right-handed alpha
Helix 4	AA4	A	148	171	Right-handed alpha
Helix 5	AA5	A	173	179	Right-handed alpha
Helix 6	AA6	A	180	188	Right-handed alpha
Helix 7	AA7	A	189	200	Right-handed alpha
Helix 8	AA8	A	205	215	Right-handed 310
Helix 9	AA9	A	217	224	Right-handed alpha
Helix 10	AB1	A	229	259	Right-handed alpha
Helix 11	AB2	A	261	265	Right-handed 310
Helix 12	AB3	A	273	286	Right-handed alpha
Helix 13	AB4	A	297	327	Right-handed alpha
Helix 14	AB5	A	352	364	Right-handed alpha
Helix 15	AB6	A	384	394	Right-handed alpha
Helix 16	AB7	A	407	414	Right-handed alpha
Helix 17	AB8	A	415	419	Right-handed 310
Helix 18	AB9	A	432	451	Right-handed alpha
Helix 19	AC1	A	462	471	Right-handed alpha
Helix 20	AC2	A	486	500	Right-handed alpha
Helix 21	AC3	A	502	510	Right-handed alpha
Helix 22	AC4	A	523	533	Right-handed alpha
Helix 23	AC5	A	549	555	Right-handed alpha
Helix 24	AC6	A	557	562	Right-handed alpha
Helix 25	AC7	A	699	703	Right-handed 310
Helix 26	AC8	A	706	713	Right-handed alpha
Helix 27	AC9	A	734	739	Right-handed alpha
Helix 28	AD1	A	740	742	Right-handed 310
Helix 29	AD2	A	759	766	Right-handed alpha
Helix 30	AD3	A	785	792	Right-handed alpha
Helix 31	AD4	A	793	797	Right-handed 310
Helix 32	AD5	A	806	809	Right-handed 310
Helix 33	AD6	A	817	830	Right-handed alpha
Helix 34	AD7	A	872	876	Right-handed 310
Helix 35	AD8	A	884	886	Right-handed 310
Helix 36	AD9	A	887	892	Right-handed alpha
Helix 37	AE1	A	902	905	Right-handed 310
Helix 38	AE2	A	906	911	Right-handed alpha
Helix 39	AE3	A	916	921	Right-handed 310
Helix 40	AE4	A	922	930	Right-handed alpha
Helix 41	AE5	A	931	941	Right-handed alpha
Helix 42	AE6	A	945	956	Right-handed alpha
Helix 43	AE7	A	965	971	Right-handed alpha
Helix 44	AE8	A	985	989	Right-handed 310
Helix 45	AE9	A	995	1008	Right-handed alpha
Helix 46	AF1	B	159	164	Right-handed alpha
Helix 47	AF2	B	186	190	Right-handed 310
Helix 48	AF3	B	206	208	Right-handed 310
Helix 49	AF4	B	209	219	Right-handed alpha
Helix 50	AF5	B	222	227	Right-handed alpha
Helix 51	AF6	B	241	245	Right-handed 310
Helix 52	AF7	B	247	251	Right-handed 310
Helix 53	AF8	B	259	297	Right-handed alpha
Helix 54	AF9	C	22	49	Right-handed alpha
Helix 55	AG1	C	92	106	Right-handed alpha
Helix 56	AG2	C	109	134	Right-handed alpha
Helix 57	AG3	C	148	171	Right-handed alpha
Helix 58	AG4	C	173	179	Right-handed alpha
Helix 59	AG5	C	180	188	Right-handed alpha
Helix 60	AG6	C	189	200	Right-handed alpha
Helix 61	AG7	C	205	215	Right-handed 310
Helix 62	AG8	C	217	224	Right-handed alpha
Helix 63	AG9	C	229	259	Right-handed alpha
Helix 64	AH1	C	261	265	Right-handed 310
Helix 65	AH2	C	273	286	Right-handed alpha
Helix 66	AH3	C	297	327	Right-handed alpha
Helix 67	AH4	C	352	364	Right-handed alpha
Helix 68	AH5	C	384	393	Right-handed alpha
Helix 69	AH6	C	407	414	Right-handed alpha
Helix 70	AH7	C	415	419	Right-handed 310
Helix 71	AH8	C	432	451	Right-handed alpha
Helix 72	AH9	C	462	471	Right-handed alpha
Helix 73	AI1	C	486	500	Right-handed alpha
Helix 74	AI2	C	502	512	Right-handed alpha
Helix 75	AI3	C	523	533	Right-handed alpha
Helix 76	AI4	C	549	555	Right-handed alpha
Helix 77	AI5	C	557	562	Right-handed alpha
Helix 78	AI6	C	699	703	Right-handed 310
Helix 79	AI7	C	706	713	Right-handed alpha
Helix 80	AI8	C	734	739	Right-handed alpha
Helix 81	AI9	C	740	742	Right-handed 310
Helix 82	AJ1	C	759	766	Right-handed alpha
Helix 83	AJ2	C	785	792	Right-handed alpha
Helix 84	AJ3	C	806	809	Right-handed 310
Helix 85	AJ4	C	817	830	Right-handed alpha
Helix 86	AJ5	C	872	876	Right-handed 310
Helix 87	AJ6	C	884	890	Right-handed 310
Helix 88	AJ7	C	902	905	Right-handed 310
Helix 89	AJ8	C	906	911	Right-handed alpha
Helix 90	AJ9	C	916	920	Right-handed 310
Helix 91	AK1	C	921	930	Right-handed alpha
Helix 92	AK2	C	931	939	Right-handed alpha
Helix 93	AK3	C	946	957	Right-handed alpha
Helix 94	AK4	C	970	974	Right-handed 310
Helix 95	AK5	C	987	994	Right-handed alpha
Helix 96	AK6	C	995	1008	Right-handed alpha
Helix 97	AK7	D	159	164	Right-handed alpha
Helix 98	AK8	D	186	190	Right-handed 310
Helix 99	AK9	D	206	208	Right-handed 310
Helix 100	AL1	D	209	219	Right-handed alpha
Helix 101	AL2	D	222	227	Right-handed alpha
Helix 102	AL3	D	241	245	Right-handed 310
Helix 103	AL4	D	247	251	Right-handed 310
Helix 104	AL5	D	259	298	Right-handed alpha
Helix 105	AL6	E	22	49	Right-handed alpha
Helix 106	AL7	E	92	106	Right-handed alpha
Helix 107	AL8	E	109	134	Right-handed alpha
Helix 108	AL9	E	147	171	Right-handed alpha
Helix 109	AM1	E	173	179	Right-handed alpha
Helix 110	AM2	E	180	188	Right-handed alpha
Helix 111	AM3	E	189	200	Right-handed alpha
Helix 112	AM4	E	205	215	Right-handed 310
Helix 113	AM5	E	217	224	Right-handed alpha
Helix 114	AM6	E	229	259	Right-handed alpha
Helix 115	AM7	E	261	265	Right-handed 310
Helix 116	AM8	E	273	286	Right-handed alpha
Helix 117	AM9	E	297	327	Right-handed alpha
Helix 118	AN1	E	352	364	Right-handed alpha
Helix 119	AN2	E	384	394	Right-handed alpha
Helix 120	AN3	E	407	414	Right-handed alpha
Helix 121	AN4	E	432	451	Right-handed alpha
Helix 122	AN5	E	462	471	Right-handed alpha
Helix 123	AN6	E	486	500	Right-handed alpha
Helix 124	AN7	E	502	512	Right-handed alpha
Helix 125	AN8	E	523	533	Right-handed alpha
Helix 126	AN9	E	543	547	Right-handed 310
Helix 127	AO1	E	549	555	Right-handed alpha
Helix 128	AO2	E	556	562	Right-handed alpha
Helix 129	AO3	E	601	606	Right-handed alpha
Helix 130	AO4	E	699	704	Right-handed alpha
Helix 131	AO5	E	706	713	Right-handed alpha
Helix 132	AO6	E	734	739	Right-handed alpha
Helix 133	AO7	E	759	771	Right-handed alpha
Helix 134	AO8	E	785	792	Right-handed alpha
Helix 135	AO9	E	817	830	Right-handed alpha
Helix 136	AP1	E	872	876	Right-handed 310
Helix 137	AP2	E	887	892	Right-handed alpha
Helix 138	AP3	E	902	905	Right-handed 310
Helix 139	AP4	E	906	911	Right-handed alpha
Helix 140	AP5	E	918	921	Right-handed 310
Helix 141	AP6	E	922	930	Right-handed alpha
Helix 142	AP7	E	930	941	Right-handed alpha
Helix 143	AP8	E	946	957	Right-handed alpha
Helix 144	AP9	E	965	971	Right-handed alpha
Helix 145	AQ1	E	986	994	Right-handed alpha
Helix 146	AQ2	E	995	1008	Right-handed alpha
Helix 147	AQ3	F	159	164	Right-handed alpha
Helix 148	AQ4	F	186	190	Right-handed 310
Helix 149	AQ5	F	206	208	Right-handed 310
Helix 150	AQ6	F	209	219	Right-handed alpha
Helix 151	AQ7	F	222	229	Right-handed alpha
Helix 152	AQ8	F	241	245	Right-handed 310
Helix 153	AQ9	F	247	251	Right-handed 310
Helix 154	AR1	F	259	298	Right-handed alpha
Helix 155	AR2	G	22	49	Right-handed alpha
Helix 156	AR3	G	92	106	Right-handed alpha
Helix 157	AR4	G	109	134	Right-handed alpha
Helix 158	AR5	G	147	171	Right-handed alpha
Helix 159	AR6	G	173	179	Right-handed alpha
Helix 160	AR7	G	180	188	Right-handed alpha
Helix 161	AR8	G	189	200	Right-handed alpha
Helix 162	AR9	G	205	215	Right-handed 310
Helix 163	AS1	G	217	224	Right-handed alpha
Helix 164	AS2	G	229	259	Right-handed alpha
Helix 165	AS3	G	261	265	Right-handed 310
Helix 166	AS4	G	273	286	Right-handed alpha
Helix 167	AS5	G	297	327	Right-handed alpha
Helix 168	AS6	G	352	364	Right-handed alpha
Helix 169	AS7	G	384	394	Right-handed alpha
Helix 170	AS8	G	407	414	Right-handed alpha
Helix 171	AS9	G	432	451	Right-handed alpha
Helix 172	AT1	G	462	471	Right-handed alpha
Helix 173	AT2	G	486	500	Right-handed alpha
Helix 174	AT3	G	502	512	Right-handed alpha
Helix 175	AT4	G	523	533	Right-handed alpha
Helix 176	AT5	G	543	547	Right-handed 310
Helix 177	AT6	G	549	555	Right-handed alpha
Helix 178	AT7	G	557	562	Right-handed alpha
Helix 179	AT8	G	601	606	Right-handed alpha
Helix 180	AT9	G	699	704	Right-handed alpha
Helix 181	AU1	G	706	713	Right-handed alpha
Helix 182	AU2	G	734	742	Right-handed alpha
Helix 183	AU3	G	759	766	Right-handed alpha
Helix 184	AU4	G	785	792	Right-handed alpha
Helix 185	AU5	G	793	797	Right-handed 310
Helix 186	AU6	G	817	830	Right-handed alpha
Helix 187	AU7	G	872	876	Right-handed 310
Helix 188	AU8	G	884	891	Right-handed 310
Helix 189	AU9	G	906	911	Right-handed alpha
Helix 190	AV1	G	916	919	Right-handed 310
Helix 191	AV2	G	920	930	Right-handed alpha
Helix 192	AV3	G	930	941	Right-handed alpha
Helix 193	AV4	G	946	957	Right-handed alpha
Helix 194	AV5	G	965	971	Right-handed alpha
Helix 195	AV6	G	987	994	Right-handed alpha
Helix 196	AV7	G	995	1007	Right-handed alpha
Helix 197	AV8	H	159	164	Right-handed alpha
Helix 198	AV9	H	206	208	Right-handed 310
Helix 199	AW1	H	209	219	Right-handed alpha
Helix 200	AW2	H	222	227	Right-handed alpha
Helix 201	AW3	H	241	245	Right-handed 310
Helix 202	AW4	H	247	251	Right-handed 310
Helix 203	AW5	H	259	298	Right-handed alpha

There are 28 sheets in PDB entry 7YNZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	141	first strand
Strand 2	A	201	203	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	402	first strand
Strand 2	A	374	379	parallel
Strand 3	A	344	349	parallel
Strand 4	A	422	425	parallel
Strand 5	A	456	460	parallel
Strand 6	A	484	485	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	537	540	first strand
Strand 2	A	594	597	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	776	779	first strand
Strand 2	A	754	758	parallel
Strand 3	A	719	724	parallel
Strand 4	A	799	804	parallel
Strand 5	A	878	881	parallel
Strand 6	A	914	915	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	976	980	first strand
Strand 2	A	1047	1053	anti-parallel
Strand 3	A	1013	1017	anti-parallel
Strand 4	A	1031	1035	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	50	first strand
Strand 2	B	54	56	anti-parallel
Strand 3	B	75	77	parallel
Strand 4	B	99	101	parallel
Strand 5	B	123	125	parallel
Strand 6	B	147	149	parallel
Strand 7	B	171	173	parallel
Strand 8	B	195	197	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	86	first strand
Strand 2	B	109	110	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	141	first strand
Strand 2	C	201	203	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	398	402	first strand
Strand 2	C	373	379	parallel
Strand 3	C	343	349	parallel
Strand 4	C	422	425	parallel
Strand 5	C	456	460	parallel
Strand 6	C	482	485	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	537	540	first strand
Strand 2	C	594	597	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	776	780	first strand
Strand 2	C	754	758	parallel
Strand 3	C	719	724	parallel
Strand 4	C	799	804	parallel
Strand 5	C	878	881	parallel
Strand 6	C	914	915	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	976	981	first strand
Strand 2	C	1047	1053	anti-parallel
Strand 3	C	1013	1017	anti-parallel
Strand 4	C	1031	1035	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	50	first strand
Strand 2	D	54	56	anti-parallel
Strand 3	D	75	77	parallel
Strand 4	D	99	101	parallel
Strand 5	D	123	125	parallel
Strand 6	D	147	149	parallel
Strand 7	D	171	173	parallel
Strand 8	D	195	197	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	86	first strand
Strand 2	D	109	110	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	139	140	first strand
Strand 2	E	202	203	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	398	402	first strand
Strand 2	E	374	379	parallel
Strand 3	E	344	349	parallel
Strand 4	E	421	425	parallel
Strand 5	E	455	460	parallel
Strand 6	E	482	485	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	537	540	first strand
Strand 2	E	594	597	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	776	780	first strand
Strand 2	E	754	758	parallel
Strand 3	E	719	724	parallel
Strand 4	E	799	804	parallel
Strand 5	E	878	881	parallel
Strand 6	E	914	915	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	976	981	first strand
Strand 2	E	1047	1053	anti-parallel
Strand 3	E	1013	1017	anti-parallel
Strand 4	E	1031	1035	anti-parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	48	50	first strand
Strand 2	F	54	56	anti-parallel
Strand 3	F	75	77	parallel
Strand 4	F	99	101	parallel
Strand 5	F	123	125	parallel
Strand 6	F	147	149	parallel
Strand 7	F	171	173	parallel
Strand 8	F	195	197	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	85	86	first strand
Strand 2	F	109	110	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	139	140	first strand
Strand 2	G	202	203	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	398	402	first strand
Strand 2	G	373	379	parallel
Strand 3	G	343	349	parallel
Strand 4	G	422	425	parallel
Strand 5	G	456	460	parallel
Strand 6	G	482	485	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	537	540	first strand
Strand 2	G	594	597	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	776	780	first strand
Strand 2	G	754	758	parallel
Strand 3	G	719	724	parallel
Strand 4	G	799	804	parallel
Strand 5	G	878	881	parallel
Strand 6	G	914	915	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	976	981	first strand
Strand 2	G	1047	1053	anti-parallel
Strand 3	G	1010	1017	anti-parallel
Strand 4	G	1031	1035	anti-parallel

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There are 8 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	48	50	first strand
Strand 2	H	54	56	anti-parallel
Strand 3	H	75	77	parallel
Strand 4	H	99	101	parallel
Strand 5	H	123	125	parallel
Strand 6	H	147	149	parallel
Strand 7	H	171	173	parallel
Strand 8	H	195	197	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	85	86	first strand
Strand 2	H	109	110	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YNZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YNZ