Analysis of interatomic Contacts of Structural Units in PDB entry:
7YO1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YO1 entry

There are 8 chains in PDB entry 7YO1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 13	ASP 1056
B	CYS 43	PRO 305
C	PRO 13	ASP 1056
D	CYS 43	PRO 305
E	PRO 13	ASP 1056
F	CYS 43	PRO 305
G	PRO 13	ASP 1056
H	CYS 43	PRO 305

There are199 helices in PDB entry 7YO1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	48	Right-handed alpha
Helix 2	AA2	A	49	51	Right-handed 310
Helix 3	AA3	A	94	106	Right-handed alpha
Helix 4	AA4	A	109	136	Right-handed alpha
Helix 5	AA5	A	147	171	Right-handed alpha
Helix 6	AA6	A	173	179	Right-handed alpha
Helix 7	AA7	A	180	188	Right-handed alpha
Helix 8	AA8	A	189	200	Right-handed alpha
Helix 9	AA9	A	207	215	Right-handed 310
Helix 10	AB1	A	216	224	Right-handed alpha
Helix 11	AB2	A	229	259	Right-handed alpha
Helix 12	AB3	A	261	265	Right-handed 310
Helix 13	AB4	A	273	286	Right-handed alpha
Helix 14	AB5	A	297	328	Right-handed alpha
Helix 15	AB6	A	352	364	Right-handed alpha
Helix 16	AB7	A	384	394	Right-handed alpha
Helix 17	AB8	A	407	414	Right-handed alpha
Helix 18	AB9	A	432	451	Right-handed alpha
Helix 19	AC1	A	462	471	Right-handed alpha
Helix 20	AC2	A	486	500	Right-handed alpha
Helix 21	AC3	A	502	511	Right-handed alpha
Helix 22	AC4	A	523	533	Right-handed alpha
Helix 23	AC5	A	542	548	Right-handed alpha
Helix 24	AC6	A	549	560	Right-handed alpha
Helix 25	AC7	A	601	606	Right-handed alpha
Helix 26	AC8	A	607	609	Right-handed 310
Helix 27	AC9	A	699	704	Right-handed alpha
Helix 28	AD1	A	706	713	Right-handed alpha
Helix 29	AD2	A	733	739	Right-handed alpha
Helix 30	AD3	A	759	767	Right-handed alpha
Helix 31	AD4	A	768	770	Right-handed 310
Helix 32	AD5	A	785	792	Right-handed alpha
Helix 33	AD6	A	818	829	Right-handed alpha
Helix 34	AD7	A	872	876	Right-handed 310
Helix 35	AD8	A	884	891	Right-handed 310
Helix 36	AD9	A	906	911	Right-handed alpha
Helix 37	AE1	A	916	920	Right-handed 310
Helix 38	AE2	A	921	930	Right-handed alpha
Helix 39	AE3	A	930	942	Right-handed alpha
Helix 40	AE4	A	946	957	Right-handed alpha
Helix 41	AE5	A	965	973	Right-handed alpha
Helix 42	AE6	A	987	993	Right-handed 310
Helix 43	AE7	A	995	1008	Right-handed alpha
Helix 44	AE8	B	159	164	Right-handed alpha
Helix 45	AE9	B	183	189	Right-handed alpha
Helix 46	AF1	B	208	219	Right-handed alpha
Helix 47	AF2	B	258	266	Right-handed alpha
Helix 48	AF3	B	267	301	Right-handed alpha
Helix 49	AF4	C	21	48	Right-handed alpha
Helix 50	AF5	C	94	106	Right-handed alpha
Helix 51	AF6	C	109	135	Right-handed alpha
Helix 52	AF7	C	147	171	Right-handed alpha
Helix 53	AF8	C	173	179	Right-handed alpha
Helix 54	AF9	C	180	188	Right-handed alpha
Helix 55	AG1	C	189	200	Right-handed alpha
Helix 56	AG2	C	207	215	Right-handed 310
Helix 57	AG3	C	216	225	Right-handed alpha
Helix 58	AG4	C	229	259	Right-handed alpha
Helix 59	AG5	C	261	265	Right-handed 310
Helix 60	AG6	C	273	286	Right-handed alpha
Helix 61	AG7	C	297	328	Right-handed alpha
Helix 62	AG8	C	352	364	Right-handed alpha
Helix 63	AG9	C	384	394	Right-handed alpha
Helix 64	AH1	C	407	414	Right-handed alpha
Helix 65	AH2	C	432	451	Right-handed alpha
Helix 66	AH3	C	462	471	Right-handed alpha
Helix 67	AH4	C	476	480	Right-handed 310
Helix 68	AH5	C	486	500	Right-handed alpha
Helix 69	AH6	C	502	511	Right-handed alpha
Helix 70	AH7	C	523	533	Right-handed alpha
Helix 71	AH8	C	542	548	Right-handed alpha
Helix 72	AH9	C	549	561	Right-handed alpha
Helix 73	AI1	C	601	608	Right-handed alpha
Helix 74	AI2	C	699	704	Right-handed alpha
Helix 75	AI3	C	706	713	Right-handed alpha
Helix 76	AI4	C	734	739	Right-handed alpha
Helix 77	AI5	C	759	764	Right-handed alpha
Helix 78	AI6	C	765	770	Right-handed 310
Helix 79	AI7	C	785	792	Right-handed alpha
Helix 80	AI8	C	793	797	Right-handed 310
Helix 81	AI9	C	817	829	Right-handed alpha
Helix 82	AJ1	C	872	876	Right-handed 310
Helix 83	AJ2	C	884	891	Right-handed 310
Helix 84	AJ3	C	902	905	Right-handed 310
Helix 85	AJ4	C	906	911	Right-handed alpha
Helix 86	AJ5	C	920	930	Right-handed alpha
Helix 87	AJ6	C	930	942	Right-handed alpha
Helix 88	AJ7	C	946	956	Right-handed alpha
Helix 89	AJ8	C	965	972	Right-handed alpha
Helix 90	AJ9	C	987	991	Right-handed 310
Helix 91	AK1	C	995	1007	Right-handed alpha
Helix 92	AK2	D	89	94	Right-handed 310
Helix 93	AK3	D	111	116	Right-handed 310
Helix 94	AK4	D	159	164	Right-handed alpha
Helix 95	AK5	D	183	190	Right-handed alpha
Helix 96	AK6	D	206	208	Right-handed 310
Helix 97	AK7	D	209	219	Right-handed alpha
Helix 98	AK8	D	220	228	Right-handed 310
Helix 99	AK9	D	261	301	Right-handed alpha
Helix 100	AL1	E	22	48	Right-handed alpha
Helix 101	AL2	E	49	51	Right-handed 310
Helix 102	AL3	E	94	106	Right-handed alpha
Helix 103	AL4	E	109	135	Right-handed alpha
Helix 104	AL5	E	147	171	Right-handed alpha
Helix 105	AL6	E	173	179	Right-handed alpha
Helix 106	AL7	E	180	188	Right-handed alpha
Helix 107	AL8	E	189	200	Right-handed alpha
Helix 108	AL9	E	206	215	Right-handed 310
Helix 109	AM1	E	216	224	Right-handed alpha
Helix 110	AM2	E	229	259	Right-handed alpha
Helix 111	AM3	E	261	265	Right-handed 310
Helix 112	AM4	E	273	286	Right-handed alpha
Helix 113	AM5	E	297	328	Right-handed alpha
Helix 114	AM6	E	352	364	Right-handed alpha
Helix 115	AM7	E	384	394	Right-handed alpha
Helix 116	AM8	E	407	414	Right-handed alpha
Helix 117	AM9	E	415	419	Right-handed 310
Helix 118	AN1	E	432	451	Right-handed alpha
Helix 119	AN2	E	462	471	Right-handed alpha
Helix 120	AN3	E	476	480	Right-handed 310
Helix 121	AN4	E	486	500	Right-handed alpha
Helix 122	AN5	E	502	512	Right-handed alpha
Helix 123	AN6	E	523	533	Right-handed alpha
Helix 124	AN7	E	542	548	Right-handed alpha
Helix 125	AN8	E	549	560	Right-handed alpha
Helix 126	AN9	E	601	610	Right-handed alpha
Helix 127	AO1	E	699	704	Right-handed alpha
Helix 128	AO2	E	706	713	Right-handed alpha
Helix 129	AO3	E	734	739	Right-handed alpha
Helix 130	AO4	E	759	767	Right-handed alpha
Helix 131	AO5	E	768	770	Right-handed 310
Helix 132	AO6	E	785	792	Right-handed alpha
Helix 133	AO7	E	817	830	Right-handed alpha
Helix 134	AO8	E	872	876	Right-handed 310
Helix 135	AO9	E	884	891	Right-handed 310
Helix 136	AP1	E	902	905	Right-handed 310
Helix 137	AP2	E	906	911	Right-handed alpha
Helix 138	AP3	E	918	920	Right-handed 310
Helix 139	AP4	E	921	930	Right-handed alpha
Helix 140	AP5	E	930	942	Right-handed alpha
Helix 141	AP6	E	946	957	Right-handed alpha
Helix 142	AP7	E	965	973	Right-handed alpha
Helix 143	AP8	E	995	1006	Right-handed alpha
Helix 144	AP9	F	159	164	Right-handed alpha
Helix 145	AQ1	F	183	190	Right-handed alpha
Helix 146	AQ2	F	208	219	Right-handed alpha
Helix 147	AQ3	F	224	228	Right-handed 310
Helix 148	AQ4	F	259	266	Right-handed alpha
Helix 149	AQ5	F	267	301	Right-handed alpha
Helix 150	AQ6	G	21	48	Right-handed alpha
Helix 151	AQ7	G	49	51	Right-handed 310
Helix 152	AQ8	G	94	106	Right-handed alpha
Helix 153	AQ9	G	109	136	Right-handed alpha
Helix 154	AR1	G	147	171	Right-handed alpha
Helix 155	AR2	G	173	179	Right-handed alpha
Helix 156	AR3	G	180	188	Right-handed alpha
Helix 157	AR4	G	189	200	Right-handed alpha
Helix 158	AR5	G	207	215	Right-handed 310
Helix 159	AR6	G	216	224	Right-handed alpha
Helix 160	AR7	G	229	259	Right-handed alpha
Helix 161	AR8	G	261	265	Right-handed 310
Helix 162	AR9	G	273	286	Right-handed alpha
Helix 163	AS1	G	298	327	Right-handed alpha
Helix 164	AS2	G	352	364	Right-handed alpha
Helix 165	AS3	G	384	394	Right-handed alpha
Helix 166	AS4	G	407	414	Right-handed alpha
Helix 167	AS5	G	432	451	Right-handed alpha
Helix 168	AS6	G	462	471	Right-handed alpha
Helix 169	AS7	G	486	500	Right-handed alpha
Helix 170	AS8	G	502	511	Right-handed alpha
Helix 171	AS9	G	523	533	Right-handed alpha
Helix 172	AT1	G	542	548	Right-handed alpha
Helix 173	AT2	G	549	560	Right-handed alpha
Helix 174	AT3	G	601	607	Right-handed alpha
Helix 175	AT4	G	699	703	Right-handed 310
Helix 176	AT5	G	706	713	Right-handed alpha
Helix 177	AT6	G	734	739	Right-handed alpha
Helix 178	AT7	G	759	767	Right-handed alpha
Helix 179	AT8	G	768	770	Right-handed 310
Helix 180	AT9	G	785	792	Right-handed alpha
Helix 181	AU1	G	812	816	Right-handed 310
Helix 182	AU2	G	817	829	Right-handed alpha
Helix 183	AU3	G	872	876	Right-handed 310
Helix 184	AU4	G	884	891	Right-handed 310
Helix 185	AU5	G	902	905	Right-handed 310
Helix 186	AU6	G	906	911	Right-handed alpha
Helix 187	AU7	G	918	921	Right-handed 310
Helix 188	AU8	G	922	930	Right-handed alpha
Helix 189	AU9	G	930	942	Right-handed alpha
Helix 190	AV1	G	946	956	Right-handed alpha
Helix 191	AV2	G	965	973	Right-handed alpha
Helix 192	AV3	G	987	991	Right-handed 310
Helix 193	AV4	G	995	1007	Right-handed alpha
Helix 194	AV5	H	159	164	Right-handed alpha
Helix 195	AV6	H	183	190	Right-handed alpha
Helix 196	AV7	H	206	208	Right-handed 310
Helix 197	AV8	H	209	219	Right-handed alpha
Helix 198	AV9	H	258	266	Right-handed alpha
Helix 199	AW1	H	267	302	Right-handed alpha

There are 33 sheets in PDB entry 7YO1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	140	first strand
Strand 2	A	202	203	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	402	first strand
Strand 2	A	373	379	parallel
Strand 3	A	343	349	parallel
Strand 4	A	421	425	parallel
Strand 5	A	455	460	parallel
Strand 6	A	482	485	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	535	540	first strand
Strand 2	A	594	599	anti-parallel
Strand 3	A	564	565	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	686	687	first strand
Strand 2	A	961	962	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	776	779	first strand
Strand 2	A	754	757	parallel
Strand 3	A	718	724	parallel
Strand 4	A	797	804	parallel
Strand 5	A	878	881	parallel
Strand 6	A	914	915	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	975	981	first strand
Strand 2	A	1047	1054	anti-parallel
Strand 3	A	1013	1017	anti-parallel
Strand 4	A	1031	1035	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	79	first strand
Strand 2	B	99	103	parallel
Strand 3	B	123	126	parallel
Strand 4	B	147	151	parallel
Strand 5	B	171	175	parallel
Strand 6	B	195	197	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	140	first strand
Strand 2	C	202	203	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	398	402	first strand
Strand 2	C	373	379	parallel
Strand 3	C	343	348	parallel
Strand 4	C	421	424	parallel
Strand 5	C	455	460	parallel
Strand 6	C	482	485	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	535	540	first strand
Strand 2	C	594	599	anti-parallel
Strand 3	C	564	565	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	686	687	first strand
Strand 2	C	961	962	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	776	779	first strand
Strand 2	C	754	757	parallel
Strand 3	C	719	724	parallel
Strand 4	C	799	804	parallel
Strand 5	C	878	882	parallel
Strand 6	C	914	916	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	974	981	first strand
Strand 2	C	1047	1055	anti-parallel
Strand 3	C	1013	1017	anti-parallel
Strand 4	C	1031	1035	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	79	first strand
Strand 2	D	100	103	parallel
Strand 3	D	123	127	parallel
Strand 4	D	147	151	parallel
Strand 5	D	171	175	parallel
Strand 6	D	195	197	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	231	232	first strand
Strand 2	D	239	240	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	139	141	first strand
Strand 2	E	201	203	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	398	401	first strand
Strand 2	E	373	378	parallel
Strand 3	E	343	348	parallel
Strand 4	E	421	424	parallel
Strand 5	E	455	460	parallel
Strand 6	E	482	485	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	535	540	first strand
Strand 2	E	594	599	anti-parallel
Strand 3	E	564	565	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	686	687	first strand
Strand 2	E	961	962	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	776	780	first strand
Strand 2	E	754	758	parallel
Strand 3	E	718	724	parallel
Strand 4	E	797	804	parallel
Strand 5	E	878	882	parallel
Strand 6	E	914	916	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	974	981	first strand
Strand 2	E	1047	1055	anti-parallel
Strand 3	E	1011	1017	anti-parallel
Strand 4	E	1031	1035	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	77	79	first strand
Strand 2	F	99	103	parallel
Strand 3	F	123	125	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	85	86	first strand
Strand 2	F	109	110	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	150	151	first strand
Strand 2	F	171	175	parallel
Strand 3	F	195	197	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	203	204	first strand
Strand 2	F	230	232	parallel
Strand 3	F	240	241	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	139	140	first strand
Strand 2	G	202	203	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	398	402	first strand
Strand 2	G	373	379	parallel
Strand 3	G	343	349	parallel
Strand 4	G	421	425	parallel
Strand 5	G	456	460	parallel
Strand 6	G	482	485	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	535	540	first strand
Strand 2	G	594	599	anti-parallel
Strand 3	G	564	565	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	776	780	first strand
Strand 2	G	754	758	parallel
Strand 3	G	718	724	parallel
Strand 4	G	797	804	parallel
Strand 5	G	878	882	parallel
Strand 6	G	914	916	parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	975	981	first strand
Strand 2	G	1047	1054	anti-parallel
Strand 3	G	1013	1017	anti-parallel
Strand 4	G	1031	1035	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	76	79	first strand
Strand 2	H	99	103	parallel
Strand 3	H	123	127	parallel
Strand 4	H	147	151	parallel
Strand 5	H	171	175	parallel
Strand 6	H	196	199	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	85	86	first strand
Strand 2	H	109	110	parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	203	204	first strand
Strand 2	H	230	232	parallel
Strand 3	H	240	241	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YO1

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YO1