Analysis of interatomic Contacts of Structural Units in PDB entry:
7YO2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YO2 entry

There are 4 chains in PDB entry 7YO2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 20	ASP 1056
B	ARG 20	ASP 1056
C	ARG 20	ASP 1056
D	ARG 20	ASP 1056

There are175 helices in PDB entry 7YO2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	34	Right-handed alpha
Helix 2	AA2	A	94	104	Right-handed alpha
Helix 3	AA3	A	109	136	Right-handed alpha
Helix 4	AA4	A	147	171	Right-handed alpha
Helix 5	AA5	A	173	179	Right-handed alpha
Helix 6	AA6	A	180	199	Right-handed alpha
Helix 7	AA7	A	206	214	Right-handed 310
Helix 8	AA8	A	215	224	Right-handed alpha
Helix 9	AA9	A	229	259	Right-handed alpha
Helix 10	AB1	A	261	265	Right-handed 310
Helix 11	AB2	A	273	286	Right-handed alpha
Helix 12	AB3	A	297	327	Right-handed alpha
Helix 13	AB4	A	352	364	Right-handed alpha
Helix 14	AB5	A	384	394	Right-handed alpha
Helix 15	AB6	A	407	414	Right-handed alpha
Helix 16	AB7	A	432	451	Right-handed alpha
Helix 17	AB8	A	463	472	Right-handed 310
Helix 18	AB9	A	486	500	Right-handed alpha
Helix 19	AC1	A	502	511	Right-handed alpha
Helix 20	AC2	A	523	533	Right-handed alpha
Helix 21	AC3	A	542	546	Right-handed 310
Helix 22	AC4	A	549	560	Right-handed alpha
Helix 23	AC5	A	601	610	Right-handed alpha
Helix 24	AC6	A	699	704	Right-handed alpha
Helix 25	AC7	A	706	713	Right-handed alpha
Helix 26	AC8	A	734	739	Right-handed alpha
Helix 27	AC9	A	747	751	Right-handed 310
Helix 28	AD1	A	759	764	Right-handed alpha
Helix 29	AD2	A	766	771	Right-handed alpha
Helix 30	AD3	A	785	792	Right-handed alpha
Helix 31	AD4	A	812	816	Right-handed 310
Helix 32	AD5	A	817	829	Right-handed alpha
Helix 33	AD6	A	872	876	Right-handed 310
Helix 34	AD7	A	884	892	Right-handed 310
Helix 35	AD8	A	902	905	Right-handed 310
Helix 36	AD9	A	906	911	Right-handed alpha
Helix 37	AE1	A	918	930	Right-handed alpha
Helix 38	AE2	A	930	943	Right-handed alpha
Helix 39	AE3	A	946	957	Right-handed alpha
Helix 40	AE4	A	965	970	Right-handed alpha
Helix 41	AE5	A	971	973	Right-handed 310
Helix 42	AE6	A	987	992	Right-handed alpha
Helix 43	AE7	A	995	1008	Right-handed alpha
Helix 44	AE8	B	21	34	Right-handed alpha
Helix 45	AE9	B	94	104	Right-handed alpha
Helix 46	AF1	B	109	135	Right-handed alpha
Helix 47	AF2	B	147	171	Right-handed alpha
Helix 48	AF3	B	173	179	Right-handed alpha
Helix 49	AF4	B	180	200	Right-handed alpha
Helix 50	AF5	B	205	214	Right-handed 310
Helix 51	AF6	B	215	224	Right-handed alpha
Helix 52	AF7	B	229	259	Right-handed alpha
Helix 53	AF8	B	261	265	Right-handed 310
Helix 54	AF9	B	273	286	Right-handed alpha
Helix 55	AG1	B	297	327	Right-handed alpha
Helix 56	AG2	B	352	364	Right-handed alpha
Helix 57	AG3	B	384	394	Right-handed alpha
Helix 58	AG4	B	407	414	Right-handed alpha
Helix 59	AG5	B	432	451	Right-handed alpha
Helix 60	AG6	B	463	472	Right-handed 310
Helix 61	AG7	B	486	500	Right-handed alpha
Helix 62	AG8	B	502	512	Right-handed alpha
Helix 63	AG9	B	523	533	Right-handed alpha
Helix 64	AH1	B	542	546	Right-handed 310
Helix 65	AH2	B	549	560	Right-handed alpha
Helix 66	AH3	B	601	608	Right-handed alpha
Helix 67	AH4	B	699	703	Right-handed 310
Helix 68	AH5	B	706	713	Right-handed alpha
Helix 69	AH6	B	734	742	Right-handed alpha
Helix 70	AH7	B	747	751	Right-handed 310
Helix 71	AH8	B	759	764	Right-handed alpha
Helix 72	AH9	B	766	771	Right-handed alpha
Helix 73	AI1	B	785	792	Right-handed alpha
Helix 74	AI2	B	793	797	Right-handed 310
Helix 75	AI3	B	813	816	Right-handed 310
Helix 76	AI4	B	817	829	Right-handed alpha
Helix 77	AI5	B	872	876	Right-handed 310
Helix 78	AI6	B	884	892	Right-handed 310
Helix 79	AI7	B	902	905	Right-handed 310
Helix 80	AI8	B	906	911	Right-handed alpha
Helix 81	AI9	B	918	930	Right-handed alpha
Helix 82	AJ1	B	930	942	Right-handed alpha
Helix 83	AJ2	B	946	957	Right-handed alpha
Helix 84	AJ3	B	965	971	Right-handed alpha
Helix 85	AJ4	B	987	992	Right-handed alpha
Helix 86	AJ5	B	995	1008	Right-handed alpha
Helix 87	AJ6	C	21	34	Right-handed alpha
Helix 88	AJ7	C	94	106	Right-handed alpha
Helix 89	AJ8	C	109	135	Right-handed alpha
Helix 90	AJ9	C	147	171	Right-handed alpha
Helix 91	AK1	C	173	178	Right-handed alpha
Helix 92	AK2	C	180	200	Right-handed alpha
Helix 93	AK3	C	206	214	Right-handed 310
Helix 94	AK4	C	215	224	Right-handed alpha
Helix 95	AK5	C	229	259	Right-handed alpha
Helix 96	AK6	C	261	265	Right-handed 310
Helix 97	AK7	C	273	286	Right-handed alpha
Helix 98	AK8	C	297	327	Right-handed alpha
Helix 99	AK9	C	352	364	Right-handed alpha
Helix 100	AL1	C	384	394	Right-handed alpha
Helix 101	AL2	C	407	414	Right-handed alpha
Helix 102	AL3	C	432	451	Right-handed alpha
Helix 103	AL4	C	463	471	Right-handed 310
Helix 104	AL5	C	476	480	Right-handed 310
Helix 105	AL6	C	486	500	Right-handed alpha
Helix 106	AL7	C	502	512	Right-handed alpha
Helix 107	AL8	C	523	533	Right-handed alpha
Helix 108	AL9	C	542	546	Right-handed 310
Helix 109	AM1	C	549	560	Right-handed alpha
Helix 110	AM2	C	601	606	Right-handed alpha
Helix 111	AM3	C	607	609	Right-handed 310
Helix 112	AM4	C	699	704	Right-handed alpha
Helix 113	AM5	C	706	713	Right-handed alpha
Helix 114	AM6	C	734	739	Right-handed alpha
Helix 115	AM7	C	740	742	Right-handed 310
Helix 116	AM8	C	759	767	Right-handed alpha
Helix 117	AM9	C	768	770	Right-handed 310
Helix 118	AN1	C	785	792	Right-handed alpha
Helix 119	AN2	C	793	797	Right-handed 310
Helix 120	AN3	C	812	816	Right-handed 310
Helix 121	AN4	C	817	829	Right-handed alpha
Helix 122	AN5	C	872	876	Right-handed 310
Helix 123	AN6	C	887	892	Right-handed 310
Helix 124	AN7	C	902	905	Right-handed 310
Helix 125	AN8	C	906	911	Right-handed alpha
Helix 126	AN9	C	918	930	Right-handed alpha
Helix 127	AO1	C	930	942	Right-handed alpha
Helix 128	AO2	C	946	957	Right-handed alpha
Helix 129	AO3	C	965	970	Right-handed alpha
Helix 130	AO4	C	971	973	Right-handed 310
Helix 131	AO5	C	987	992	Right-handed alpha
Helix 132	AO6	C	995	1008	Right-handed alpha
Helix 133	AO7	D	21	34	Right-handed alpha
Helix 134	AO8	D	94	104	Right-handed alpha
Helix 135	AO9	D	109	135	Right-handed alpha
Helix 136	AP1	D	147	171	Right-handed alpha
Helix 137	AP2	D	173	178	Right-handed alpha
Helix 138	AP3	D	180	199	Right-handed alpha
Helix 139	AP4	D	205	214	Right-handed 310
Helix 140	AP5	D	215	224	Right-handed alpha
Helix 141	AP6	D	229	259	Right-handed alpha
Helix 142	AP7	D	261	265	Right-handed 310
Helix 143	AP8	D	273	286	Right-handed alpha
Helix 144	AP9	D	297	327	Right-handed alpha
Helix 145	AQ1	D	352	364	Right-handed alpha
Helix 146	AQ2	D	384	394	Right-handed alpha
Helix 147	AQ3	D	407	414	Right-handed alpha
Helix 148	AQ4	D	432	451	Right-handed alpha
Helix 149	AQ5	D	463	472	Right-handed 310
Helix 150	AQ6	D	486	500	Right-handed alpha
Helix 151	AQ7	D	502	511	Right-handed alpha
Helix 152	AQ8	D	523	533	Right-handed alpha
Helix 153	AQ9	D	542	546	Right-handed 310
Helix 154	AR1	D	549	560	Right-handed alpha
Helix 155	AR2	D	601	610	Right-handed alpha
Helix 156	AR3	D	699	704	Right-handed alpha
Helix 157	AR4	D	706	713	Right-handed alpha
Helix 158	AR5	D	734	739	Right-handed alpha
Helix 159	AR6	D	747	751	Right-handed 310
Helix 160	AR7	D	759	771	Right-handed alpha
Helix 161	AR8	D	785	792	Right-handed alpha
Helix 162	AR9	D	793	797	Right-handed 310
Helix 163	AS1	D	812	816	Right-handed 310
Helix 164	AS2	D	817	829	Right-handed alpha
Helix 165	AS3	D	872	876	Right-handed 310
Helix 166	AS4	D	884	892	Right-handed 310
Helix 167	AS5	D	902	905	Right-handed 310
Helix 168	AS6	D	906	911	Right-handed alpha
Helix 169	AS7	D	918	930	Right-handed alpha
Helix 170	AS8	D	930	942	Right-handed alpha
Helix 171	AS9	D	946	957	Right-handed alpha
Helix 172	AT1	D	965	970	Right-handed alpha
Helix 173	AT2	D	971	973	Right-handed 310
Helix 174	AT3	D	987	992	Right-handed alpha
Helix 175	AT4	D	995	1007	Right-handed alpha

There are 20 sheets in PDB entry 7YO2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	402	first strand
Strand 2	A	374	379	parallel
Strand 3	A	344	349	parallel
Strand 4	A	421	425	parallel
Strand 5	A	455	460	parallel
Strand 6	A	482	485	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	535	540	first strand
Strand 2	A	594	599	anti-parallel
Strand 3	A	564	570	anti-parallel
Strand 4	A	578	581	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	686	687	first strand
Strand 2	A	961	962	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	776	780	first strand
Strand 2	A	754	758	parallel
Strand 3	A	719	723	parallel
Strand 4	A	799	803	parallel
Strand 5	A	878	882	parallel
Strand 6	A	914	916	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	976	981	first strand
Strand 2	A	1047	1053	anti-parallel
Strand 3	A	1010	1017	anti-parallel
Strand 4	A	1031	1035	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	398	402	first strand
Strand 2	B	373	379	parallel
Strand 3	B	343	349	parallel
Strand 4	B	421	425	parallel
Strand 5	B	455	460	parallel
Strand 6	B	482	485	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	535	540	first strand
Strand 2	B	594	599	anti-parallel
Strand 3	B	564	570	anti-parallel
Strand 4	B	578	581	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	686	687	first strand
Strand 2	B	961	962	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	776	780	first strand
Strand 2	B	754	758	parallel
Strand 3	B	719	723	parallel
Strand 4	B	799	803	parallel
Strand 5	B	878	882	parallel
Strand 6	B	914	916	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	976	981	first strand
Strand 2	B	1047	1053	anti-parallel
Strand 3	B	1010	1017	anti-parallel
Strand 4	B	1031	1035	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	398	401	first strand
Strand 2	C	374	378	parallel
Strand 3	C	344	349	parallel
Strand 4	C	421	425	parallel
Strand 5	C	455	460	parallel
Strand 6	C	482	485	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	535	540	first strand
Strand 2	C	594	599	anti-parallel
Strand 3	C	564	570	anti-parallel
Strand 4	C	578	581	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	686	687	first strand
Strand 2	C	961	962	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	776	780	first strand
Strand 2	C	754	758	parallel
Strand 3	C	719	723	parallel
Strand 4	C	799	803	parallel
Strand 5	C	878	882	parallel
Strand 6	C	914	916	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	976	981	first strand
Strand 2	C	1047	1053	anti-parallel
Strand 3	C	1010	1017	anti-parallel
Strand 4	C	1031	1035	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	398	401	first strand
Strand 2	D	374	378	parallel
Strand 3	D	344	349	parallel
Strand 4	D	421	425	parallel
Strand 5	D	456	460	parallel
Strand 6	D	482	485	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	535	540	first strand
Strand 2	D	594	599	anti-parallel
Strand 3	D	564	570	anti-parallel
Strand 4	D	578	581	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	686	687	first strand
Strand 2	D	961	962	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	776	780	first strand
Strand 2	D	754	758	parallel
Strand 3	D	719	723	parallel
Strand 4	D	799	803	parallel
Strand 5	D	878	882	parallel
Strand 6	D	914	916	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	976	981	first strand
Strand 2	D	1047	1053	anti-parallel
Strand 3	D	1010	1017	anti-parallel
Strand 4	D	1031	1035	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YO2

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YO2