Analysis of interatomic Contacts of Structural Units in PDB entry:
7YO3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YO3 entry

There are 2 chains in PDB entry 7YO3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 13ASP 1056
B
 ALA 40ALA 301
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 7YO3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 49Right-handed alpha
Helix 2
AA2
A
92 106Right-handed alpha
Helix 3
AA3
A
109 134Right-handed alpha
Helix 4
AA4
A
148 171Right-handed alpha
Helix 5
AA5
A
173 179Right-handed alpha
Helix 6
AA6
A
180 188Right-handed alpha
Helix 7
AA7
A
189 200Right-handed alpha
Helix 8
AA8
A
205 215Right-handed 310
Helix 9
AA9
A
217 224Right-handed alpha
Helix 10
AB1
A
229 259Right-handed alpha
Helix 11
AB2
A
261 265Right-handed 310
Helix 12
AB3
A
273 286Right-handed alpha
Helix 13
AB4
A
297 327Right-handed alpha
Helix 14
AB5
A
352 364Right-handed alpha
Helix 15
AB6
A
384 394Right-handed alpha
Helix 16
AB7
A
407 414Right-handed alpha
Helix 17
AB8
A
432 451Right-handed alpha
Helix 18
AB9
A
462 471Right-handed alpha
Helix 19
AC1
A
486 500Right-handed alpha
Helix 20
AC2
A
502 510Right-handed alpha
Helix 21
AC3
A
523 533Right-handed alpha
Helix 22
AC4
A
549 555Right-handed alpha
Helix 23
AC5
A
557 562Right-handed alpha
Helix 24
AC6
A
699 703Right-handed 310
Helix 25
AC7
A
706 713Right-handed alpha
Helix 26
AC8
A
734 739Right-handed alpha
Helix 27
AC9
A
740 743Right-handed 310
Helix 28
AD1
A
759 766Right-handed alpha
Helix 29
AD2
A
785 792Right-handed alpha
Helix 30
AD3
A
793 797Right-handed 310
Helix 31
AD4
A
806 809Right-handed 310
Helix 32
AD5
A
817 830Right-handed alpha
Helix 33
AD6
A
872 876Right-handed 310
Helix 34
AD7
A
884 886Right-handed 310
Helix 35
AD8
A
887 892Right-handed alpha
Helix 36
AD9
A
902 905Right-handed 310
Helix 37
AE1
A
906 911Right-handed alpha
Helix 38
AE2
A
916 921Right-handed 310
Helix 39
AE3
A
922 930Right-handed alpha
Helix 40
AE4
A
931 941Right-handed alpha
Helix 41
AE5
A
946 956Right-handed alpha
Helix 42
AE6
A
965 971Right-handed alpha
Helix 43
AE7
A
985 989Right-handed 310
Helix 44
AE8
A
995 1008Right-handed alpha
Helix 45
AE9
B
159 164Right-handed alpha
Helix 46
AF1
B
186 190Right-handed 310
Helix 47
AF2
B
206 208Right-handed 310
Helix 48
AF3
B
209 219Right-handed alpha
Helix 49
AF4
B
222 227Right-handed alpha
Helix 50
AF5
B
241 245Right-handed 310
Helix 51
AF6
B
247 251Right-handed 310
Helix 52
AF7
B
259 297Right-handed alpha
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There are 7 sheets in PDB entry 7YO3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 141first strand
Strand 2
A
201 203anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
398 402first strand
Strand 2
A
374 379parallel
Strand 3
A
344 349parallel
Strand 4
A
422 425parallel
Strand 5
A
456 460parallel
Strand 6
A
484 485parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
537 540first strand
Strand 2
A
594 597anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
776 779first strand
Strand 2
A
754 758parallel
Strand 3
A
719 724parallel
Strand 4
A
799 804parallel
Strand 5
A
878 881parallel
Strand 6
A
914 915parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
976 980first strand
Strand 2
A
1047 1053anti-parallel
Strand 3
A
1013 1017anti-parallel
Strand 4
A
1031 1035anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 50first strand
Strand 2
B
54 56anti-parallel
Strand 3
B
75 77parallel
Strand 4
B
99 101parallel
Strand 5
B
123 125parallel
Strand 6
B
147 149parallel
Strand 7
B
171 173parallel
Strand 8
B
195 197parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 86first strand
Strand 2
B
109 110parallel
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