Analysis of interatomic Contacts of Structural Units in PDB entry:
7YO4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YO4 entry

There are 8 chains in PDB entry 7YO4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ARG 20ASP 1056
B
CYS 43GLY 284
C
ARG 20ASP 1056
D
CYS 43GLY 284
E
ARG 20ASP 1056
F
CYS 43GLY 284
G
ARG 20ASP 1056
H
CYS 43GLY 284
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are202 helices in PDB entry 7YO4. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
21 34Right-handed alpha
Helix 2
AA2
A
95 106Right-handed alpha
Helix 3
AA3
A
109 135Right-handed alpha
Helix 4
AA4
A
147 171Right-handed alpha
Helix 5
AA5
A
174 179Right-handed alpha
Helix 6
AA6
A
180 197Right-handed alpha
Helix 7
AA7
A
206 215Right-handed 310
Helix 8
AA8
A
216 224Right-handed alpha
Helix 9
AA9
A
229 259Right-handed alpha
Helix 10
AB1
A
261 265Right-handed 310
Helix 11
AB2
A
273 286Right-handed alpha
Helix 12
AB3
A
297 318Right-handed alpha
Helix 13
AB4
A
319 328Right-handed alpha
Helix 14
AB5
A
352 364Right-handed alpha
Helix 15
AB6
A
384 394Right-handed alpha
Helix 16
AB7
A
407 414Right-handed alpha
Helix 17
AB8
A
415 419Right-handed 310
Helix 18
AB9
A
432 451Right-handed alpha
Helix 19
AC1
A
462 472Right-handed 310
Helix 20
AC2
A
486 500Right-handed alpha
Helix 21
AC3
A
502 512Right-handed alpha
Helix 22
AC4
A
523 533Right-handed alpha
Helix 23
AC5
A
542 546Right-handed 310
Helix 24
AC6
A
549 562Right-handed alpha
Helix 25
AC7
A
601 606Right-handed alpha
Helix 26
AC8
A
607 611Right-handed 310
Helix 27
AC9
A
621 626Right-handed alpha
Helix 28
AD1
A
699 704Right-handed alpha
Helix 29
AD2
A
706 713Right-handed alpha
Helix 30
AD3
A
734 739Right-handed alpha
Helix 31
AD4
A
740 743Right-handed 310
Helix 32
AD5
A
759 767Right-handed alpha
Helix 33
AD6
A
768 770Right-handed 310
Helix 34
AD7
A
785 793Right-handed alpha
Helix 35
AD8
A
794 797Right-handed 310
Helix 36
AD9
A
814 816Right-handed 310
Helix 37
AE1
A
817 829Right-handed alpha
Helix 38
AE2
A
884 889Right-handed alpha
Helix 39
AE3
A
906 911Right-handed alpha
Helix 40
AE4
A
917 930Right-handed alpha
Helix 41
AE5
A
931 942Right-handed alpha
Helix 42
AE6
A
946 957Right-handed alpha
Helix 43
AE7
A
965 973Right-handed alpha
Helix 44
AE8
A
987 992Right-handed alpha
Helix 45
AE9
A
995 1008Right-handed alpha
Helix 46
AF1
B
159 164Right-handed alpha
Helix 47
AF2
B
183 190Right-handed alpha
Helix 48
AF3
B
208 219Right-handed alpha
Helix 49
AF4
B
220 224Right-handed 310
Helix 50
AF5
B
258 284Right-handed alpha
Helix 51
AF6
C
21 34Right-handed alpha
Helix 52
AF7
C
95 106Right-handed alpha
Helix 53
AF8
C
109 135Right-handed alpha
Helix 54
AF9
C
147 171Right-handed alpha
Helix 55
AG1
C
180 199Right-handed alpha
Helix 56
AG2
C
206 212Right-handed 310
Helix 57
AG3
C
213 215Right-handed 310
Helix 58
AG4
C
216 224Right-handed alpha
Helix 59
AG5
C
229 259Right-handed alpha
Helix 60
AG6
C
261 265Right-handed 310
Helix 61
AG7
C
273 286Right-handed alpha
Helix 62
AG8
C
297 318Right-handed alpha
Helix 63
AG9
C
319 328Right-handed alpha
Helix 64
AH1
C
352 364Right-handed alpha
Helix 65
AH2
C
384 394Right-handed alpha
Helix 66
AH3
C
407 414Right-handed alpha
Helix 67
AH4
C
415 419Right-handed 310
Helix 68
AH5
C
432 451Right-handed alpha
Helix 69
AH6
C
462 465Right-handed 310
Helix 70
AH7
C
466 471Right-handed alpha
Helix 71
AH8
C
486 500Right-handed alpha
Helix 72
AH9
C
502 512Right-handed alpha
Helix 73
AI1
C
523 533Right-handed alpha
Helix 74
AI2
C
542 546Right-handed 310
Helix 75
AI3
C
549 562Right-handed alpha
Helix 76
AI4
C
601 606Right-handed alpha
Helix 77
AI5
C
607 610Right-handed 310
Helix 78
AI6
C
621 626Right-handed alpha
Helix 79
AI7
C
699 704Right-handed 310
Helix 80
AI8
C
706 713Right-handed alpha
Helix 81
AI9
C
734 742Right-handed alpha
Helix 82
AJ1
C
747 751Right-handed 310
Helix 83
AJ2
C
759 767Right-handed alpha
Helix 84
AJ3
C
768 770Right-handed 310
Helix 85
AJ4
C
785 793Right-handed alpha
Helix 86
AJ5
C
813 816Right-handed 310
Helix 87
AJ6
C
817 829Right-handed alpha
Helix 88
AJ7
C
872 876Right-handed 310
Helix 89
AJ8
C
885 891Right-handed 310
Helix 90
AJ9
C
906 911Right-handed alpha
Helix 91
AK1
C
917 930Right-handed alpha
Helix 92
AK2
C
931 942Right-handed alpha
Helix 93
AK3
C
946 957Right-handed alpha
Helix 94
AK4
C
965 972Right-handed alpha
Helix 95
AK5
C
987 992Right-handed alpha
Helix 96
AK6
C
995 1007Right-handed alpha
Helix 97
AK7
D
159 164Right-handed alpha
Helix 98
AK8
D
183 190Right-handed alpha
Helix 99
AK9
D
206 208Right-handed 310
Helix 100
AL1
D
209 219Right-handed alpha
Helix 101
AL2
D
220 224Right-handed 310
Helix 102
AL3
D
243 245Right-handed 310
Helix 103
AL4
D
258 284Right-handed alpha
Helix 104
AL5
E
21 34Right-handed alpha
Helix 105
AL6
E
95 106Right-handed alpha
Helix 106
AL7
E
109 135Right-handed alpha
Helix 107
AL8
E
147 171Right-handed alpha
Helix 108
AL9
E
180 197Right-handed alpha
Helix 109
AM1
E
206 215Right-handed 310
Helix 110
AM2
E
216 224Right-handed alpha
Helix 111
AM3
E
229 259Right-handed alpha
Helix 112
AM4
E
261 265Right-handed 310
Helix 113
AM5
E
273 286Right-handed alpha
Helix 114
AM6
E
297 318Right-handed alpha
Helix 115
AM7
E
318 328Right-handed alpha
Helix 116
AM8
E
352 364Right-handed alpha
Helix 117
AM9
E
384 394Right-handed alpha
Helix 118
AN1
E
407 414Right-handed alpha
Helix 119
AN2
E
432 451Right-handed alpha
Helix 120
AN3
E
462 472Right-handed 310
Helix 121
AN4
E
486 500Right-handed alpha
Helix 122
AN5
E
502 512Right-handed alpha
Helix 123
AN6
E
523 533Right-handed alpha
Helix 124
AN7
E
542 546Right-handed 310
Helix 125
AN8
E
549 562Right-handed alpha
Helix 126
AN9
E
601 606Right-handed alpha
Helix 127
AO1
E
607 609Right-handed 310
Helix 128
AO2
E
621 626Right-handed alpha
Helix 129
AO3
E
706 713Right-handed alpha
Helix 130
AO4
E
734 742Right-handed alpha
Helix 131
AO5
E
759 767Right-handed alpha
Helix 132
AO6
E
768 770Right-handed 310
Helix 133
AO7
E
785 792Right-handed alpha
Helix 134
AO8
E
793 797Right-handed 310
Helix 135
AO9
E
813 816Right-handed 310
Helix 136
AP1
E
817 829Right-handed alpha
Helix 137
AP2
E
885 891Right-handed 310
Helix 138
AP3
E
906 911Right-handed alpha
Helix 139
AP4
E
917 930Right-handed alpha
Helix 140
AP5
E
931 942Right-handed alpha
Helix 141
AP6
E
946 957Right-handed alpha
Helix 142
AP7
E
965 972Right-handed alpha
Helix 143
AP8
E
987 992Right-handed alpha
Helix 144
AP9
E
995 1007Right-handed alpha
Helix 145
AQ1
F
159 164Right-handed alpha
Helix 146
AQ2
F
183 190Right-handed alpha
Helix 147
AQ3
F
206 208Right-handed 310
Helix 148
AQ4
F
209 219Right-handed alpha
Helix 149
AQ5
F
220 224Right-handed 310
Helix 150
AQ6
F
243 245Right-handed 310
Helix 151
AQ7
F
258 283Right-handed alpha
Helix 152
AQ8
G
21 34Right-handed alpha
Helix 153
AQ9
G
95 106Right-handed alpha
Helix 154
AR1
G
109 135Right-handed alpha
Helix 155
AR2
G
147 171Right-handed alpha
Helix 156
AR3
G
174 179Right-handed alpha
Helix 157
AR4
G
180 199Right-handed alpha
Helix 158
AR5
G
206 212Right-handed 310
Helix 159
AR6
G
216 224Right-handed alpha
Helix 160
AR7
G
229 259Right-handed alpha
Helix 161
AR8
G
273 286Right-handed alpha
Helix 162
AR9
G
297 318Right-handed alpha
Helix 163
AS1
G
318 328Right-handed alpha
Helix 164
AS2
G
352 364Right-handed alpha
Helix 165
AS3
G
384 394Right-handed alpha
Helix 166
AS4
G
407 414Right-handed alpha
Helix 167
AS5
G
432 451Right-handed alpha
Helix 168
AS6
G
462 465Right-handed 310
Helix 169
AS7
G
466 471Right-handed alpha
Helix 170
AS8
G
486 500Right-handed alpha
Helix 171
AS9
G
502 512Right-handed alpha
Helix 172
AT1
G
523 533Right-handed alpha
Helix 173
AT2
G
542 546Right-handed 310
Helix 174
AT3
G
549 560Right-handed alpha
Helix 175
AT4
G
601 606Right-handed alpha
Helix 176
AT5
G
607 609Right-handed 310
Helix 177
AT6
G
621 626Right-handed alpha
Helix 178
AT7
G
699 704Right-handed alpha
Helix 179
AT8
G
706 713Right-handed alpha
Helix 180
AT9
G
734 739Right-handed alpha
Helix 181
AU1
G
740 742Right-handed 310
Helix 182
AU2
G
747 751Right-handed 310
Helix 183
AU3
G
759 767Right-handed alpha
Helix 184
AU4
G
768 770Right-handed 310
Helix 185
AU5
G
785 793Right-handed alpha
Helix 186
AU6
G
813 816Right-handed 310
Helix 187
AU7
G
817 829Right-handed alpha
Helix 188
AU8
G
872 876Right-handed 310
Helix 189
AU9
G
885 891Right-handed 310
Helix 190
AV1
G
906 911Right-handed alpha
Helix 191
AV2
G
917 930Right-handed alpha
Helix 192
AV3
G
931 943Right-handed alpha
Helix 193
AV4
G
946 957Right-handed alpha
Helix 194
AV5
G
965 973Right-handed alpha
Helix 195
AV6
G
988 992Right-handed 310
Helix 196
AV7
G
995 1007Right-handed alpha
Helix 197
AV8
H
159 164Right-handed alpha
Helix 198
AV9
H
183 190Right-handed alpha
Helix 199
AW1
H
206 208Right-handed 310
Helix 200
AW2
H
209 219Right-handed alpha
Helix 201
AW3
H
220 224Right-handed 310
Helix 202
AW4
H
258 284Right-handed alpha
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There are 31 sheets in PDB entry 7YO4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
139 140first strand
Strand 2
A
202 203anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
398 402first strand
Strand 2
A
374 379parallel
Strand 3
A
344 349parallel
Strand 4
A
421 425parallel
Strand 5
A
455 460parallel
Strand 6
A
482 485parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
535 540first strand
Strand 2
A
594 599anti-parallel
Strand 3
A
564 570anti-parallel
Strand 4
A
578 581anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
686 687first strand
Strand 2
A
961 962anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
776 780first strand
Strand 2
A
754 758parallel
Strand 3
A
719 723parallel
Strand 4
A
799 803parallel
Strand 5
A
878 882parallel
Strand 6
A
914 916parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
975 981first strand
Strand 2
A
1047 1054anti-parallel
Strand 3
A
1010 1017anti-parallel
Strand 4
A
1031 1035anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
99 100first strand
Strand 2
B
123 125parallel
Strand 3
B
147 149parallel
Strand 4
B
171 173parallel
Strand 5
B
195 197parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
230 231first strand
Strand 2
B
240 241anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
139 140first strand
Strand 2
C
202 203anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
398 402first strand
Strand 2
C
374 379parallel
Strand 3
C
344 349parallel
Strand 4
C
421 425parallel
Strand 5
C
455 460parallel
Strand 6
C
482 485parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
535 540first strand
Strand 2
C
594 599anti-parallel
Strand 3
C
564 570anti-parallel
Strand 4
C
578 581anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
686 687first strand
Strand 2
C
961 962anti-parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
776 780first strand
Strand 2
C
754 758parallel
Strand 3
C
719 723parallel
Strand 4
C
799 803parallel
Strand 5
C
878 882parallel
Strand 6
C
914 916parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
975 981first strand
Strand 2
C
1047 1054anti-parallel
Strand 3
C
1011 1017anti-parallel
Strand 4
C
1031 1035anti-parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
102 103first strand
Strand 2
D
123 127parallel
Strand 3
D
147 149parallel
Strand 4
D
171 173parallel
Strand 5
D
195 197parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
203 204first strand
Strand 2
D
230 232parallel
Strand 3
D
240 241anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
139 140first strand
Strand 2
E
202 203anti-parallel
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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
398 402first strand
Strand 2
E
374 379parallel
Strand 3
E
344 349parallel
Strand 4
E
421 425parallel
Strand 5
E
455 460parallel
Strand 6
E
482 485parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
535 540first strand
Strand 2
E
594 599anti-parallel
Strand 3
E
564 570anti-parallel
Strand 4
E
578 581anti-parallel
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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
686 687first strand
Strand 2
E
961 962anti-parallel
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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
776 780first strand
Strand 2
E
754 758parallel
Strand 3
E
719 723parallel
Strand 4
E
799 803parallel
Strand 5
E
878 882parallel
Strand 6
E
914 916parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
975 981first strand
Strand 2
E
1048 1054anti-parallel
Strand 3
E
1013 1017anti-parallel
Strand 4
E
1031 1035anti-parallel
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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
99 100first strand
Strand 2
F
123 125parallel
Strand 3
F
147 149parallel
Strand 4
F
171 173parallel
Strand 5
F
195 197parallel
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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
203 204first strand
Strand 2
F
230 232parallel
Strand 3
F
240 241anti-parallel
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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
139 140first strand
Strand 2
G
202 203anti-parallel
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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
398 402first strand
Strand 2
G
374 379parallel
Strand 3
G
344 349parallel
Strand 4
G
421 425parallel
Strand 5
G
455 460parallel
Strand 6
G
482 485parallel
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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
535 540first strand
Strand 2
G
594 599anti-parallel
Strand 3
G
564 570anti-parallel
Strand 4
G
578 581anti-parallel
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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
686 687first strand
Strand 2
G
961 962anti-parallel
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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
776 780first strand
Strand 2
G
754 758parallel
Strand 3
G
719 723parallel
Strand 4
G
799 803parallel
Strand 5
G
878 882parallel
Strand 6
G
914 916parallel
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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
975 981first strand
Strand 2
G
1047 1054anti-parallel
Strand 3
G
1010 1017anti-parallel
Strand 4
G
1031 1035anti-parallel
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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
123 125first strand
Strand 2
H
147 149parallel
Strand 3
H
171 173parallel
Strand 4
H
195 197parallel
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