Analysis of interatomic Contacts of Structural Units in PDB entry:
7YO5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YO5 entry

There are 4 chains in PDB entry 7YO5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 19	ASP 1056
B	GLN 19	ASP 1056
C	GLN 19	ASP 1056
D	GLN 19	ASP 1056

There are163 helices in PDB entry 7YO5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	47	Right-handed alpha
Helix 2	AA2	A	48	51	Right-handed 310
Helix 3	AA3	A	95	106	Right-handed alpha
Helix 4	AA4	A	109	135	Right-handed alpha
Helix 5	AA5	A	147	171	Right-handed alpha
Helix 6	AA6	A	173	179	Right-handed alpha
Helix 7	AA7	A	180	200	Right-handed alpha
Helix 8	AA8	A	206	215	Right-handed 310
Helix 9	AA9	A	216	224	Right-handed alpha
Helix 10	AB1	A	229	259	Right-handed alpha
Helix 11	AB2	A	261	265	Right-handed 310
Helix 12	AB3	A	273	286	Right-handed alpha
Helix 13	AB4	A	297	327	Right-handed alpha
Helix 14	AB5	A	352	364	Right-handed alpha
Helix 15	AB6	A	384	394	Right-handed alpha
Helix 16	AB7	A	407	414	Right-handed alpha
Helix 17	AB8	A	415	419	Right-handed 310
Helix 18	AB9	A	432	451	Right-handed alpha
Helix 19	AC1	A	462	471	Right-handed alpha
Helix 20	AC2	A	486	500	Right-handed alpha
Helix 21	AC3	A	502	512	Right-handed alpha
Helix 22	AC4	A	523	533	Right-handed alpha
Helix 23	AC5	A	542	546	Right-handed 310
Helix 24	AC6	A	549	555	Right-handed alpha
Helix 25	AC7	A	556	561	Right-handed alpha
Helix 26	AC8	A	601	611	Right-handed alpha
Helix 27	AC9	A	699	704	Right-handed alpha
Helix 28	AD1	A	706	713	Right-handed alpha
Helix 29	AD2	A	733	739	Right-handed alpha
Helix 30	AD3	A	759	767	Right-handed alpha
Helix 31	AD4	A	768	770	Right-handed 310
Helix 32	AD5	A	785	792	Right-handed alpha
Helix 33	AD6	A	793	795	Right-handed 310
Helix 34	AD7	A	817	829	Right-handed alpha
Helix 35	AD8	A	884	886	Right-handed 310
Helix 36	AD9	A	887	892	Right-handed alpha
Helix 37	AE1	A	906	911	Right-handed alpha
Helix 38	AE2	A	918	921	Right-handed 310
Helix 39	AE3	A	922	930	Right-handed alpha
Helix 40	AE4	A	930	942	Right-handed alpha
Helix 41	AE5	A	946	957	Right-handed alpha
Helix 42	AE6	A	965	970	Right-handed alpha
Helix 43	AE7	A	995	1007	Right-handed alpha
Helix 44	AE8	B	21	47	Right-handed alpha
Helix 45	AE9	B	95	106	Right-handed alpha
Helix 46	AF1	B	109	135	Right-handed alpha
Helix 47	AF2	B	149	170	Right-handed alpha
Helix 48	AF3	B	173	179	Right-handed alpha
Helix 49	AF4	B	180	200	Right-handed alpha
Helix 50	AF5	B	206	215	Right-handed 310
Helix 51	AF6	B	216	224	Right-handed alpha
Helix 52	AF7	B	229	259	Right-handed alpha
Helix 53	AF8	B	261	265	Right-handed 310
Helix 54	AF9	B	273	286	Right-handed alpha
Helix 55	AG1	B	297	328	Right-handed alpha
Helix 56	AG2	B	352	364	Right-handed alpha
Helix 57	AG3	B	384	394	Right-handed alpha
Helix 58	AG4	B	407	415	Right-handed alpha
Helix 59	AG5	B	432	451	Right-handed alpha
Helix 60	AG6	B	463	471	Right-handed alpha
Helix 61	AG7	B	476	480	Right-handed 310
Helix 62	AG8	B	486	500	Right-handed alpha
Helix 63	AG9	B	502	511	Right-handed alpha
Helix 64	AH1	B	523	533	Right-handed alpha
Helix 65	AH2	B	542	546	Right-handed 310
Helix 66	AH3	B	549	555	Right-handed alpha
Helix 67	AH4	B	556	562	Right-handed alpha
Helix 68	AH5	B	602	611	Right-handed alpha
Helix 69	AH6	B	706	713	Right-handed alpha
Helix 70	AH7	B	734	739	Right-handed alpha
Helix 71	AH8	B	759	771	Right-handed alpha
Helix 72	AH9	B	785	792	Right-handed alpha
Helix 73	AI1	B	817	829	Right-handed alpha
Helix 74	AI2	B	884	891	Right-handed 310
Helix 75	AI3	B	906	911	Right-handed alpha
Helix 76	AI4	B	918	921	Right-handed 310
Helix 77	AI5	B	922	930	Right-handed alpha
Helix 78	AI6	B	930	941	Right-handed alpha
Helix 79	AI7	B	946	957	Right-handed alpha
Helix 80	AI8	B	965	973	Right-handed alpha
Helix 81	AI9	B	984	988	Right-handed 310
Helix 82	AJ1	B	995	1008	Right-handed alpha
Helix 83	AJ2	C	21	45	Right-handed alpha
Helix 84	AJ3	C	47	51	Right-handed 310
Helix 85	AJ4	C	95	104	Right-handed alpha
Helix 86	AJ5	C	109	136	Right-handed alpha
Helix 87	AJ6	C	149	171	Right-handed alpha
Helix 88	AJ7	C	173	178	Right-handed alpha
Helix 89	AJ8	C	181	200	Right-handed alpha
Helix 90	AJ9	C	206	214	Right-handed 310
Helix 91	AK1	C	215	224	Right-handed alpha
Helix 92	AK2	C	229	259	Right-handed alpha
Helix 93	AK3	C	261	265	Right-handed 310
Helix 94	AK4	C	273	286	Right-handed alpha
Helix 95	AK5	C	297	327	Right-handed alpha
Helix 96	AK6	C	352	364	Right-handed alpha
Helix 97	AK7	C	384	394	Right-handed alpha
Helix 98	AK8	C	407	414	Right-handed alpha
Helix 99	AK9	C	432	451	Right-handed alpha
Helix 100	AL1	C	463	470	Right-handed alpha
Helix 101	AL2	C	486	500	Right-handed alpha
Helix 102	AL3	C	502	512	Right-handed alpha
Helix 103	AL4	C	523	533	Right-handed alpha
Helix 104	AL5	C	542	546	Right-handed 310
Helix 105	AL6	C	549	556	Right-handed alpha
Helix 106	AL7	C	601	605	Right-handed 310
Helix 107	AL8	C	606	611	Right-handed alpha
Helix 108	AL9	C	699	704	Right-handed alpha
Helix 109	AM1	C	706	713	Right-handed alpha
Helix 110	AM2	C	733	739	Right-handed alpha
Helix 111	AM3	C	740	743	Right-handed 310
Helix 112	AM4	C	759	768	Right-handed alpha
Helix 113	AM5	C	785	792	Right-handed alpha
Helix 114	AM6	C	817	829	Right-handed alpha
Helix 115	AM7	C	872	876	Right-handed 310
Helix 116	AM8	C	884	891	Right-handed 310
Helix 117	AM9	C	902	905	Right-handed 310
Helix 118	AN1	C	906	911	Right-handed alpha
Helix 119	AN2	C	919	930	Right-handed alpha
Helix 120	AN3	C	930	942	Right-handed alpha
Helix 121	AN4	C	946	957	Right-handed alpha
Helix 122	AN5	C	965	972	Right-handed alpha
Helix 123	AN6	C	985	991	Right-handed 310
Helix 124	AN7	C	995	1008	Right-handed alpha
Helix 125	AN8	C	1019	1021	Right-handed 310
Helix 126	AN9	D	21	46	Right-handed alpha
Helix 127	AO1	D	95	106	Right-handed alpha
Helix 128	AO2	D	109	135	Right-handed alpha
Helix 129	AO3	D	148	170	Right-handed alpha
Helix 130	AO4	D	173	178	Right-handed alpha
Helix 131	AO5	D	180	199	Right-handed alpha
Helix 132	AO6	D	206	215	Right-handed 310
Helix 133	AO7	D	216	222	Right-handed alpha
Helix 134	AO8	D	229	259	Right-handed alpha
Helix 135	AO9	D	261	265	Right-handed 310
Helix 136	AP1	D	273	286	Right-handed alpha
Helix 137	AP2	D	297	318	Right-handed alpha
Helix 138	AP3	D	318	326	Right-handed alpha
Helix 139	AP4	D	352	364	Right-handed alpha
Helix 140	AP5	D	384	394	Right-handed alpha
Helix 141	AP6	D	407	415	Right-handed alpha
Helix 142	AP7	D	432	451	Right-handed alpha
Helix 143	AP8	D	463	470	Right-handed alpha
Helix 144	AP9	D	486	500	Right-handed alpha
Helix 145	AQ1	D	502	512	Right-handed alpha
Helix 146	AQ2	D	523	533	Right-handed alpha
Helix 147	AQ3	D	542	546	Right-handed 310
Helix 148	AQ4	D	549	554	Right-handed alpha
Helix 149	AQ5	D	601	611	Right-handed alpha
Helix 150	AQ6	D	699	704	Right-handed alpha
Helix 151	AQ7	D	706	713	Right-handed alpha
Helix 152	AQ8	D	734	742	Right-handed alpha
Helix 153	AQ9	D	759	771	Right-handed alpha
Helix 154	AR1	D	785	792	Right-handed alpha
Helix 155	AR2	D	817	829	Right-handed alpha
Helix 156	AR3	D	884	892	Right-handed 310
Helix 157	AR4	D	906	911	Right-handed alpha
Helix 158	AR5	D	920	930	Right-handed alpha
Helix 159	AR6	D	930	941	Right-handed alpha
Helix 160	AR7	D	946	957	Right-handed alpha
Helix 161	AR8	D	967	971	Right-handed 310
Helix 162	AR9	D	986	991	Right-handed alpha
Helix 163	AS1	D	995	1008	Right-handed alpha

There are 22 sheets in PDB entry 7YO5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	141	first strand
Strand 2	A	201	202	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	400	first strand
Strand 2	A	374	378	parallel
Strand 3	A	344	349	parallel
Strand 4	A	421	425	parallel
Strand 5	A	455	460	parallel
Strand 6	A	482	485	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	535	539	first strand
Strand 2	A	595	599	anti-parallel
Strand 3	A	565	566	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	686	687	first strand
Strand 2	A	961	962	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	776	780	first strand
Strand 2	A	754	758	parallel
Strand 3	A	718	724	parallel
Strand 4	A	797	804	parallel
Strand 5	A	878	882	parallel
Strand 6	A	914	916	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	976	981	first strand
Strand 2	A	1047	1053	anti-parallel
Strand 3	A	1010	1017	anti-parallel
Strand 4	A	1031	1035	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	141	first strand
Strand 2	B	201	203	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	398	399	first strand
Strand 2	B	373	377	parallel
Strand 3	B	343	349	parallel
Strand 4	B	421	425	parallel
Strand 5	B	455	460	parallel
Strand 6	B	482	485	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	535	539	first strand
Strand 2	B	595	599	anti-parallel
Strand 3	B	565	566	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	776	779	first strand
Strand 2	B	754	757	parallel
Strand 3	B	718	724	parallel
Strand 4	B	797	804	parallel
Strand 5	B	878	882	parallel
Strand 6	B	914	916	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	977	981	first strand
Strand 2	B	1047	1052	anti-parallel
Strand 3	B	1010	1017	anti-parallel
Strand 4	B	1031	1035	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	398	399	first strand
Strand 2	C	374	377	parallel
Strand 3	C	344	349	parallel
Strand 4	C	421	425	parallel
Strand 5	C	455	460	parallel
Strand 6	C	483	485	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	535	539	first strand
Strand 2	C	595	599	anti-parallel
Strand 3	C	564	566	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	686	687	first strand
Strand 2	C	961	962	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	776	780	first strand
Strand 2	C	754	758	parallel
Strand 3	C	718	724	parallel
Strand 4	C	797	804	parallel
Strand 5	C	878	882	parallel
Strand 6	C	914	916	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	977	981	first strand
Strand 2	C	1047	1052	anti-parallel
Strand 3	C	1010	1017	anti-parallel
Strand 4	C	1031	1035	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	139	140	first strand
Strand 2	D	202	203	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	398	399	first strand
Strand 2	D	373	378	parallel
Strand 3	D	343	348	parallel
Strand 4	D	421	424	parallel
Strand 5	D	455	460	parallel
Strand 6	D	482	485	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	535	538	first strand
Strand 2	D	596	599	anti-parallel
Strand 3	D	564	566	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	686	687	first strand
Strand 2	D	961	962	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	776	779	first strand
Strand 2	D	754	758	parallel
Strand 3	D	718	724	parallel
Strand 4	D	797	804	parallel
Strand 5	D	878	882	parallel
Strand 6	D	914	916	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	977	981	first strand
Strand 2	D	1047	1052	anti-parallel
Strand 3	D	1010	1017	anti-parallel
Strand 4	D	1031	1035	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YO5

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YO5