Analysis of interatomic Contacts of Structural Units in PDB entry:
7YO7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YO7 entry

There are 2 chains in PDB entry 7YO7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 48	PRO 803
B	THR 47	PRO 803

There are 50 helices in PDB entry 7YO7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	60	73	Right-handed alpha
Helix 2	AA2	A	75	83	Right-handed alpha
Helix 3	AA3	A	97	101	Right-handed 310
Helix 4	AA4	A	125	131	Right-handed alpha
Helix 5	AA5	A	134	152	Right-handed alpha
Helix 6	AA6	A	174	178	Right-handed 310
Helix 7	AA7	A	182	200	Right-handed alpha
Helix 8	AA8	A	229	233	Right-handed alpha
Helix 9	AA9	A	241	248	Right-handed alpha
Helix 10	AB1	A	249	260	Right-handed alpha
Helix 11	AB2	A	279	284	Right-handed alpha
Helix 12	AB3	A	307	314	Right-handed alpha
Helix 13	AB4	A	323	327	Right-handed 310
Helix 14	AB5	A	333	342	Right-handed alpha
Helix 15	AB6	A	346	364	Right-handed alpha
Helix 16	AB7	A	397	410	Right-handed alpha
Helix 17	AB8	A	432	435	Right-handed 310
Helix 18	AB9	A	476	488	Right-handed alpha
Helix 19	AC1	A	504	513	Right-handed alpha
Helix 20	AC2	A	541	553	Right-handed alpha
Helix 21	AC3	A	568	573	Right-handed alpha
Helix 22	AC4	A	586	588	Right-handed 310
Helix 23	AC5	A	589	599	Right-handed alpha
Helix 24	AC6	A	615	619	Right-handed 310
Helix 25	AC7	A	643	651	Right-handed alpha
Helix 26	AC8	A	765	768	Right-handed 310
Helix 27	AC9	B	60	74	Right-handed alpha
Helix 28	AD1	B	75	83	Right-handed alpha
Helix 29	AD2	B	97	101	Right-handed 310
Helix 30	AD3	B	125	131	Right-handed alpha
Helix 31	AD4	B	134	153	Right-handed alpha
Helix 32	AD5	B	174	178	Right-handed 310
Helix 33	AD6	B	182	200	Right-handed alpha
Helix 34	AD7	B	230	232	Right-handed 310
Helix 35	AD8	B	241	248	Right-handed alpha
Helix 36	AD9	B	249	259	Right-handed alpha
Helix 37	AE1	B	279	285	Right-handed alpha
Helix 38	AE2	B	307	314	Right-handed alpha
Helix 39	AE3	B	322	327	Right-handed 310
Helix 40	AE4	B	333	342	Right-handed alpha
Helix 41	AE5	B	346	364	Right-handed alpha
Helix 42	AE6	B	397	410	Right-handed alpha
Helix 43	AE7	B	432	435	Right-handed 310
Helix 44	AE8	B	476	488	Right-handed alpha
Helix 45	AE9	B	504	513	Right-handed alpha
Helix 46	AF1	B	541	553	Right-handed alpha
Helix 47	AF2	B	589	599	Right-handed alpha
Helix 48	AF3	B	615	619	Right-handed 310
Helix 49	AF4	B	642	651	Right-handed alpha
Helix 50	AF5	B	765	768	Right-handed 310

There are 14 sheets in PDB entry 7YO7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	93	first strand
Strand 2	A	106	109	anti-parallel
Strand 3	A	156	158	parallel
Strand 4	A	203	209	parallel
Strand 5	A	263	266	parallel
Strand 6	A	296	299	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	224	first strand
Strand 2	A	227	228	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	275	first strand
Strand 2	A	270	271	anti-parallel
Strand 3	A	237	239	parallel
Strand 4	A	633	635	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	411	415	first strand
Strand 2	A	577	584	anti-parallel
Strand 3	A	556	562	parallel
Strand 4	A	518	525	parallel
Strand 5	A	426	430	parallel
Strand 6	A	491	495	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	667	675	first strand
Strand 2	A	705	715	anti-parallel
Strand 3	A	755	763	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	740	750	first strand
Strand 2	A	721	730	anti-parallel
Strand 3	A	784	789	anti-parallel
Strand 4	A	797	801	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	769	771	first strand
Strand 2	A	776	778	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	94	first strand
Strand 2	B	105	109	anti-parallel
Strand 3	B	156	158	parallel
Strand 4	B	203	209	parallel
Strand 5	B	263	266	parallel
Strand 6	B	296	299	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	224	first strand
Strand 2	B	227	228	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	275	first strand
Strand 2	B	270	271	anti-parallel
Strand 3	B	237	239	parallel
Strand 4	B	633	635	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	411	415	first strand
Strand 2	B	577	584	anti-parallel
Strand 3	B	556	562	parallel
Strand 4	B	518	525	parallel
Strand 5	B	426	430	parallel
Strand 6	B	491	495	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	667	675	first strand
Strand 2	B	705	715	anti-parallel
Strand 3	B	755	763	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	740	750	first strand
Strand 2	B	721	730	anti-parallel
Strand 3	B	784	789	anti-parallel
Strand 4	B	797	801	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	769	771	first strand
Strand 2	B	776	778	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YO7

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YO7