Analysis of interatomic Contacts of Structural Units in PDB entry:
7YOI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YOI entry

There are 3 chains in PDB entry 7YOI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 41
A
 CYS 43GLU 303
B
 ILE 1THR 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 7YOI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 11Right-handed 310
Helix 2
AA2
A
36 40Right-handed 310
Helix 3
AA3
A
41 56Right-handed alpha
Helix 4
AA4
A
71 85Right-handed alpha
Helix 5
AA5
A
97 107Right-handed alpha
Helix 6
AA6
A
118 133Right-handed alpha
Helix 7
AA7
A
147 156Right-handed alpha
Helix 8
AA8
A
156 165Right-handed alpha
Helix 9
AA9
A
179 192Right-handed alpha
Helix 10
AB1
A
208 215Right-handed alpha
Helix 11
AB2
A
239 243Right-handed 310
Helix 12
AB3
A
250 266Right-handed alpha
Helix 13
AB4
A
270 285Right-handed alpha
Helix 14
AB5
A
286 290Right-handed 310
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There are 2 sheets in PDB entry 7YOI. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 18first strand
Strand 2
A
28 32anti-parallel
Strand 3
A
293 298parallel
Strand 4
A
169 175parallel
Strand 5
A
198 204parallel
Strand 6
A
245 249parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 113first strand
Strand 2
A
88 92parallel
Strand 3
A
64 67parallel
Strand 4
A
138 139parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il