Analysis of interatomic Contacts of Structural Units in PDB entry:
7YOJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YOJ entry

There are 4 chains in PDB entry 7YOJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 867
C
 C 1 G 12
D
 G 1 G 30
B
 G 0 C 173
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 7YOJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 40Right-handed alpha
Helix 2
AA2
A
48 70Right-handed alpha
Helix 3
AA3
A
154 163Right-handed alpha
Helix 4
AA4
A
164 166Right-handed 310
Helix 5
AA5
A
170 183Right-handed alpha
Helix 6
AA6
A
184 197Right-handed alpha
Helix 7
AA7
A
201 215Right-handed alpha
Helix 8
AA8
A
220 225Right-handed alpha
Helix 9
AA9
A
227 233Right-handed alpha
Helix 10
AB1
A
234 260Right-handed alpha
Helix 11
AB2
A
266 287Right-handed alpha
Helix 12
AB3
A
320 334Right-handed alpha
Helix 13
AB4
A
337 341Right-handed 310
Helix 14
AB5
A
351 366Right-handed alpha
Helix 15
AB6
A
431 436Right-handed alpha
Helix 16
AB7
A
441 445Right-handed 310
Helix 17
AB8
A
457 468Right-handed alpha
Helix 18
AB9
A
565 589Right-handed alpha
Helix 19
AC1
A
593 612Right-handed alpha
Helix 20
AC2
A
615 633Right-handed alpha
Helix 21
AC3
A
659 674Right-handed alpha
Helix 22
AC4
A
693 698Right-handed 310
Helix 23
AC5
A
706 717Right-handed alpha
Helix 24
AC6
A
795 814Right-handed alpha
Helix 25
AC7
A
818 830Right-handed alpha
Helix 26
AC8
A
831 833Right-handed 310
Helix 27
AC9
A
861 866Right-handed alpha
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There are 6 sheets in PDB entry 7YOJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
383 385first strand
Strand 2
A
489 491anti-parallel
Strand 3
A
502 505anti-parallel
Strand 4
A
146 148anti-parallel
Strand 5
A
449 455anti-parallel
Strand 6
A
407 412anti-parallel
Strand 7
A
394 399anti-parallel
Strand 8
A
424 426anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 292first strand
Strand 2
A
298 302anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
481 486first strand
Strand 2
A
507 511anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
687 690first strand
Strand 2
A
640 643parallel
Strand 3
A
532 536parallel
Strand 4
A
546 550anti-parallel
Strand 5
A
555 558anti-parallel
Strand 6
A
834 835parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
739 740first strand
Strand 2
A
854 858anti-parallel
Strand 3
A
841 845anti-parallel
Strand 4
A
791 794anti-parallel
Strand 5
A
773 776anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
781 782first strand
Strand 2
A
785 786anti-parallel
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