Analysis of interatomic Contacts of Structural Units in PDB entry:
7YOO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YOO entry

There are 6 chains in PDB entry 7YOO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 4	PHE 354
B	GLN 6	ASN 340
G	ILE 9	ARG 62
L	TYR 1	ARG 35
R	LEU 40	ARG 341
S	ASP 1	LYS 248

There are 33 helices in PDB entry 7YOO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	28	Right-handed alpha
Helix 2	AA2	A	29	33	Right-handed 310
Helix 3	AA3	A	46	54	Right-handed alpha
Helix 4	AA4	A	207	212	Right-handed alpha
Helix 5	AA5	A	213	216	Right-handed 310
Helix 6	AA6	A	242	255	Right-handed alpha
Helix 7	AA7	A	270	279	Right-handed alpha
Helix 8	AA8	A	295	309	Right-handed alpha
Helix 9	AA9	A	329	351	Right-handed alpha
Helix 10	AB1	B	7	26	Right-handed alpha
Helix 11	AB2	B	29	34	Right-handed alpha
Helix 12	AB3	B	35	37	Right-handed 310
Helix 13	AB4	G	12	24	Right-handed alpha
Helix 14	AB5	G	29	44	Right-handed alpha
Helix 15	AB6	G	45	48	Right-handed 310
Helix 16	AB7	L	17	32	Right-handed alpha
Helix 17	AB8	R	42	45	Right-handed 310
Helix 18	AB9	R	46	78	Right-handed alpha
Helix 19	AC1	R	83	113	Right-handed alpha
Helix 20	AC2	R	119	124	Right-handed alpha
Helix 21	AC3	R	125	153	Right-handed alpha
Helix 22	AC4	R	161	180	Right-handed alpha
Helix 23	AC5	R	180	186	Right-handed alpha
Helix 24	AC6	R	213	228	Right-handed alpha
Helix 25	AC7	R	228	248	Right-handed alpha
Helix 26	AC8	R	255	281	Right-handed alpha
Helix 27	AC9	R	281	294	Right-handed alpha
Helix 28	AD1	R	302	315	Right-handed alpha
Helix 29	AD2	R	316	319	Right-handed 310
Helix 30	AD3	R	320	325	Right-handed alpha
Helix 31	AD4	R	329	341	Right-handed alpha
Helix 32	AD5	S	28	32	Right-handed 310
Helix 33	AD6	S	220	224	Right-handed 310

There are 15 sheets in PDB entry 7YOO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	190	first strand
Strand 2	A	195	200	anti-parallel
Strand 3	A	34	39	parallel
Strand 4	A	220	226	parallel
Strand 5	A	263	269	parallel
Strand 6	A	319	320	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	175	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	251	254	anti-parallel
Strand 4	B	260	263	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	278	first strand
Strand 2	B	284	288	anti-parallel
Strand 3	B	293	298	anti-parallel
Strand 4	B	304	309	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	188	195	first strand
Strand 2	R	198	204	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	3	7	first strand
Strand 2	S	21	25	anti-parallel
Strand 3	S	78	84	anti-parallel
Strand 4	S	17	19	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	3	7	first strand
Strand 2	S	21	25	anti-parallel
Strand 3	S	78	84	anti-parallel
Strand 4	S	68	73	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	11	12	first strand
Strand 2	S	118	119	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	58	60	first strand
Strand 2	S	45	51	anti-parallel
Strand 3	S	33	39	anti-parallel
Strand 4	S	93	99	anti-parallel
Strand 5	S	115	116	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	158	159	first strand
Strand 2	S	211	216	anti-parallel
Strand 3	S	203	208	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	194	195	first strand
Strand 2	S	186	190	anti-parallel
Strand 3	S	174	179	anti-parallel
Strand 4	S	226	231	anti-parallel
Strand 5	S	243	244	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YOO

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YOO