Analysis of interatomic Contacts of Structural Units in PDB entry:
7YOT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YOT entry

There are 5 chains in PDB entry 7YOT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 MET 262GLY 312
C
 SER 264SER 305
B
 GLN 268ALA 301
E
 ALA 274GLY 399
A
 ARG 8VAL 1384
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 73 helices in PDB entry 7YOT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
262 281Right-handed alpha
Helix 2
AA2
D
296 303Right-handed alpha
Helix 3
AA3
C
265 286Right-handed alpha
Helix 4
AA4
C
287 291Right-handed 310
Helix 5
AA5
C
298 305Right-handed alpha
Helix 6
AA6
B
269 280Right-handed alpha
Helix 7
AA7
B
295 300Right-handed alpha
Helix 8
AA8
E
275 279Right-handed 310
Helix 9
AA9
E
296 302Right-handed alpha
Helix 10
AB1
E
337 342Right-handed 310
Helix 11
AB2
E
352 366Right-handed alpha
Helix 12
AB3
E
369 379Right-handed alpha
Helix 13
AB4
E
389 397Right-handed alpha
Helix 14
AB5
A
9 13Right-handed 310
Helix 15
AB6
A
25 35Right-handed alpha
Helix 16
AB7
A
41 45Right-handed 310
Helix 17
AB8
A
54 59Right-handed alpha
Helix 18
AB9
A
63 80Right-handed alpha
Helix 19
AC1
A
94 100Right-handed alpha
Helix 20
AC2
A
103 141Right-handed alpha
Helix 21
AC3
A
151 160Right-handed alpha
Helix 22
AC4
A
169 192Right-handed alpha
Helix 23
AC5
A
230 254Right-handed alpha
Helix 24
AC6
A
257 279Right-handed alpha
Helix 25
AC7
A
282 296Right-handed alpha
Helix 26
AC8
A
308 323Right-handed alpha
Helix 27
AC9
A
327 342Right-handed alpha
Helix 28
AD1
A
346 352Right-handed alpha
Helix 29
AD2
A
353 356Right-handed 310
Helix 30
AD3
A
366 379Right-handed alpha
Helix 31
AD4
A
386 408Right-handed alpha
Helix 32
AD5
A
416 420Right-handed 310
Helix 33
AD6
A
424 432Right-handed alpha
Helix 34
AD7
A
436 443Right-handed alpha
Helix 35
AD8
A
443 448Right-handed alpha
Helix 36
AD9
A
479 484Right-handed 310
Helix 37
AE1
A
485 489Right-handed 310
Helix 38
AE2
A
493 497Right-handed 310
Helix 39
AE3
A
505 512Right-handed alpha
Helix 40
AE4
A
517 522Right-handed alpha
Helix 41
AE5
A
523 525Right-handed 310
Helix 42
AE6
A
558 576Right-handed alpha
Helix 43
AE7
A
577 581Right-handed 310
Helix 44
AE8
A
599 603Right-handed 310
Helix 45
AE9
A
645 649Right-handed 310
Helix 46
AF1
A
650 666Right-handed alpha
Helix 47
AF2
A
672 681Right-handed alpha
Helix 48
AF3
A
699 703Right-handed 310
Helix 49
AF4
A
721 739Right-handed alpha
Helix 50
AF5
A
766 791Right-handed alpha
Helix 51
AF6
A
823 829Right-handed alpha
Helix 52
AF7
A
841 859Right-handed alpha
Helix 53
AF8
A
862 881Right-handed alpha
Helix 54
AF9
A
901 911Right-handed alpha
Helix 55
AG1
A
922 926Right-handed 310
Helix 56
AG2
A
933 948Right-handed alpha
Helix 57
AG3
A
952 961Right-handed alpha
Helix 58
AG4
A
968 975Right-handed alpha
Helix 59
AG5
A
986 1000Right-handed alpha
Helix 60
AG6
A
1015 1029Right-handed alpha
Helix 61
AG7
A
1034 1045Right-handed alpha
Helix 62
AG8
A
1045 1055Right-handed alpha
Helix 63
AG9
A
1060 1071Right-handed alpha
Helix 64
AH1
A
1075 1083Right-handed alpha
Helix 65
AH2
A
1083 1096Right-handed alpha
Helix 66
AH3
A
1112 1125Right-handed alpha
Helix 67
AH4
A
1125 1130Right-handed alpha
Helix 68
AH5
A
1141 1146Right-handed alpha
Helix 69
AH6
A
1212 1230Right-handed alpha
Helix 70
AH7
A
1232 1244Right-handed alpha
Helix 71
AH8
A
1251 1256Right-handed alpha
Helix 72
AH9
A
1287 1291Right-handed 310
Helix 73
AI1
A
1311 1327Right-handed alpha
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There are 7 sheets in PDB entry 7YOT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
308 310first strand
Strand 2
B
284 287parallel
Strand 3
A
382 385anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 204first strand
Strand 2
A
207 211anti-parallel
Strand 3
A
216 220anti-parallel
Strand 4
A
225 229anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
555 556first strand
Strand 2
A
538 540anti-parallel
Strand 3
A
682 685parallel
Strand 4
A
709 711anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
743 748first strand
Strand 2
A
752 761anti-parallel
Strand 3
A
632 643anti-parallel
Strand 4
A
795 796anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
743 748first strand
Strand 2
A
752 761anti-parallel
Strand 3
A
632 643anti-parallel
Strand 4
A
802 804anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
807 810first strand
Strand 2
A
813 816anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1292 1294first strand
Strand 2
A
1167 1172anti-parallel
Strand 3
A
1339 1344anti-parallel
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