Analysis of interatomic Contacts of Structural Units in PDB entry:
7YOU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YOU entry

There are 5 chains in PDB entry 7YOU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 8SER 2201
D
 ILE 259GLY 312
C
 ILE 259SER 305
B
 THR 261ALA 301
E
 ALA 274GLY 399
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are111 helices in PDB entry 7YOU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 13Right-handed 310
Helix 2
AA2
A
25 36Right-handed alpha
Helix 3
AA3
A
49 53Right-handed 310
Helix 4
AA4
A
54 59Right-handed alpha
Helix 5
AA5
A
63 79Right-handed alpha
Helix 6
AA6
A
94 100Right-handed alpha
Helix 7
AA7
A
103 140Right-handed alpha
Helix 8
AA8
A
151 160Right-handed alpha
Helix 9
AA9
A
169 192Right-handed alpha
Helix 10
AB1
A
233 254Right-handed alpha
Helix 11
AB2
A
257 279Right-handed alpha
Helix 12
AB3
A
282 298Right-handed alpha
Helix 13
AB4
A
299 301Right-handed 310
Helix 14
AB5
A
308 323Right-handed alpha
Helix 15
AB6
A
327 342Right-handed alpha
Helix 16
AB7
A
346 353Right-handed alpha
Helix 17
AB8
A
354 356Right-handed 310
Helix 18
AB9
A
366 379Right-handed alpha
Helix 19
AC1
A
386 408Right-handed alpha
Helix 20
AC2
A
416 420Right-handed 310
Helix 21
AC3
A
422 432Right-handed alpha
Helix 22
AC4
A
436 443Right-handed alpha
Helix 23
AC5
A
443 448Right-handed alpha
Helix 24
AC6
A
479 484Right-handed 310
Helix 25
AC7
A
490 495Right-handed alpha
Helix 26
AC8
A
505 512Right-handed alpha
Helix 27
AC9
A
517 523Right-handed alpha
Helix 28
AD1
A
528 533Right-handed alpha
Helix 29
AD2
A
558 575Right-handed alpha
Helix 30
AD3
A
576 580Right-handed 310
Helix 31
AD4
A
588 602Right-handed alpha
Helix 32
AD5
A
604 608Right-handed 310
Helix 33
AD6
A
650 666Right-handed alpha
Helix 34
AD7
A
672 681Right-handed alpha
Helix 35
AD8
A
721 739Right-handed alpha
Helix 36
AD9
A
766 792Right-handed alpha
Helix 37
AE1
A
823 829Right-handed alpha
Helix 38
AE2
A
841 859Right-handed alpha
Helix 39
AE3
A
862 881Right-handed alpha
Helix 40
AE4
A
901 910Right-handed alpha
Helix 41
AE5
A
912 916Right-handed 310
Helix 42
AE6
A
922 927Right-handed 310
Helix 43
AE7
A
933 948Right-handed alpha
Helix 44
AE8
A
952 961Right-handed alpha
Helix 45
AE9
A
968 975Right-handed alpha
Helix 46
AF1
A
986 1000Right-handed alpha
Helix 47
AF2
A
1015 1029Right-handed alpha
Helix 48
AF3
A
1034 1045Right-handed alpha
Helix 49
AF4
A
1045 1055Right-handed alpha
Helix 50
AF5
A
1060 1071Right-handed alpha
Helix 51
AF6
A
1075 1083Right-handed alpha
Helix 52
AF7
A
1083 1096Right-handed alpha
Helix 53
AF8
A
1112 1130Right-handed alpha
Helix 54
AF9
A
1141 1146Right-handed alpha
Helix 55
AG1
A
1159 1163Right-handed 310
Helix 56
AG2
A
1212 1230Right-handed alpha
Helix 57
AG3
A
1232 1244Right-handed alpha
Helix 58
AG4
A
1250 1258Right-handed alpha
Helix 59
AG5
A
1287 1291Right-handed 310
Helix 60
AG6
A
1311 1327Right-handed alpha
Helix 61
AG7
A
1385 1399Right-handed alpha
Helix 62
AG8
A
1400 1402Right-handed 310
Helix 63
AG9
A
1408 1421Right-handed alpha
Helix 64
AH1
A
1462 1482Right-handed alpha
Helix 65
AH2
A
1489 1500Right-handed alpha
Helix 66
AH3
A
1506 1513Right-handed alpha
Helix 67
AH4
A
1515 1525Right-handed alpha
Helix 68
AH5
A
1538 1542Right-handed 310
Helix 69
AH6
A
1543 1562Right-handed alpha
Helix 70
AH7
A
1580 1597Right-handed alpha
Helix 71
AH8
A
1610 1623Right-handed alpha
Helix 72
AH9
A
1635 1641Right-handed alpha
Helix 73
AI1
A
1650 1665Right-handed alpha
Helix 74
AI2
A
1667 1675Right-handed alpha
Helix 75
AI3
A
1696 1700Right-handed 310
Helix 76
AI4
A
1739 1744Right-handed 310
Helix 77
AI5
A
1756 1762Right-handed 310
Helix 78
AI6
A
1763 1768Right-handed alpha
Helix 79
AI7
A
1782 1792Right-handed alpha
Helix 80
AI8
A
1804 1808Right-handed 310
Helix 81
AI9
A
1818 1823Right-handed alpha
Helix 82
AJ1
A
1824 1832Right-handed alpha
Helix 83
AJ2
A
1859 1870Right-handed alpha
Helix 84
AJ3
A
1889 1907Right-handed alpha
Helix 85
AJ4
A
1922 1934Right-handed alpha
Helix 86
AJ5
A
1945 1949Right-handed 310
Helix 87
AJ6
A
1966 1983Right-handed alpha
Helix 88
AJ7
A
1989 2012Right-handed alpha
Helix 89
AJ8
A
2014 2023Right-handed alpha
Helix 90
AJ9
A
2040 2046Right-handed 310
Helix 91
AK1
A
2054 2076Right-handed alpha
Helix 92
AK2
A
2095 2117Right-handed alpha
Helix 93
AK3
A
2122 2135Right-handed alpha
Helix 94
AK4
A
2138 2143Right-handed alpha
Helix 95
AK5
A
2144 2151Right-handed alpha
Helix 96
AK6
A
2154 2162Right-handed alpha
Helix 97
AK7
A
2162 2172Right-handed alpha
Helix 98
AK8
A
2180 2197Right-handed alpha
Helix 99
AK9
D
260 281Right-handed alpha
Helix 100
AL1
D
296 304Right-handed alpha
Helix 101
AL2
C
260 286Right-handed alpha
Helix 102
AL3
C
288 292Right-handed 310
Helix 103
AL4
C
298 305Right-handed alpha
Helix 104
AL5
B
262 279Right-handed alpha
Helix 105
AL6
B
295 300Right-handed alpha
Helix 106
AL7
E
275 280Right-handed alpha
Helix 107
AL8
E
295 302Right-handed alpha
Helix 108
AL9
E
338 343Right-handed alpha
Helix 109
AM1
E
352 366Right-handed alpha
Helix 110
AM2
E
369 379Right-handed alpha
Helix 111
AM3
E
388 397Right-handed alpha
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There are 9 sheets in PDB entry 7YOU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 88first strand
Strand 2
A
225 229parallel
Strand 3
A
216 220anti-parallel
Strand 4
A
207 211anti-parallel
Strand 5
A
200 204anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 385first strand
Strand 2
B
284 287anti-parallel
Strand 3
E
308 310parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
555 556first strand
Strand 2
A
539 541anti-parallel
Strand 3
A
682 686parallel
Strand 4
A
709 711anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
744 749first strand
Strand 2
A
752 761anti-parallel
Strand 3
A
632 641anti-parallel
Strand 4
A
802 804anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
807 810first strand
Strand 2
A
813 816anti-parallel
Strand 3
A
819 821anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1147 1151first strand
Strand 2
A
1339 1344anti-parallel
Strand 3
A
1167 1172anti-parallel
Strand 4
A
1292 1294anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1176 1177first strand
Strand 2
A
1334 1335anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1705 1708first strand
Strand 2
A
1941 1944anti-parallel
Strand 3
A
1955 1961anti-parallel
Strand 4
A
1908 1918anti-parallel
Strand 5
A
1875 1880parallel
Strand 6
A
1773 1777parallel
Strand 7
A
1796 1799parallel
Strand 8
A
1843 1846parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1705 1708first strand
Strand 2
A
1941 1944anti-parallel
Strand 3
A
1955 1961anti-parallel
Strand 4
A
1937 1939anti-parallel
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