Analysis of interatomic Contacts of Structural Units in PDB entry:
7YOV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YOV entry

There are 5 chains in PDB entry 7YOV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 GLU 236ALA 311
C
 GLU 236HIS 306
E
 GLU 236GLY 399
B
 MET 234ALA 301
A
 ARG 8VAL 1384
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 73 helices in PDB entry 7YOV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
238 280Right-handed alpha
Helix 2
AA2
D
296 303Right-handed alpha
Helix 3
AA3
C
237 285Right-handed alpha
Helix 4
AA4
C
298 304Right-handed alpha
Helix 5
AA5
E
237 278Right-handed alpha
Helix 6
AA6
E
296 302Right-handed alpha
Helix 7
AA7
E
316 320Right-handed 310
Helix 8
AA8
E
337 341Right-handed 310
Helix 9
AA9
E
352 366Right-handed alpha
Helix 10
AB1
E
369 382Right-handed alpha
Helix 11
AB2
E
388 397Right-handed alpha
Helix 12
AB3
B
235 274Right-handed alpha
Helix 13
AB4
B
274 279Right-handed alpha
Helix 14
AB5
B
295 300Right-handed alpha
Helix 15
AB6
A
8 12Right-handed 310
Helix 16
AB7
A
25 36Right-handed alpha
Helix 17
AB8
A
41 45Right-handed 310
Helix 18
AB9
A
54 59Right-handed alpha
Helix 19
AC1
A
63 79Right-handed alpha
Helix 20
AC2
A
94 100Right-handed alpha
Helix 21
AC3
A
103 141Right-handed alpha
Helix 22
AC4
A
153 160Right-handed alpha
Helix 23
AC5
A
169 192Right-handed alpha
Helix 24
AC6
A
230 254Right-handed alpha
Helix 25
AC7
A
257 274Right-handed alpha
Helix 26
AC8
A
274 279Right-handed alpha
Helix 27
AC9
A
281 288Right-handed alpha
Helix 28
AD1
A
288 299Right-handed alpha
Helix 29
AD2
A
308 323Right-handed alpha
Helix 30
AD3
A
327 342Right-handed alpha
Helix 31
AD4
A
347 352Right-handed alpha
Helix 32
AD5
A
353 356Right-handed 310
Helix 33
AD6
A
366 379Right-handed alpha
Helix 34
AD7
A
386 408Right-handed alpha
Helix 35
AD8
A
424 432Right-handed alpha
Helix 36
AD9
A
436 443Right-handed alpha
Helix 37
AE1
A
443 448Right-handed alpha
Helix 38
AE2
A
479 484Right-handed 310
Helix 39
AE3
A
490 495Right-handed alpha
Helix 40
AE4
A
505 512Right-handed alpha
Helix 41
AE5
A
517 523Right-handed alpha
Helix 42
AE6
A
558 575Right-handed alpha
Helix 43
AE7
A
576 581Right-handed 310
Helix 44
AE8
A
593 598Right-handed alpha
Helix 45
AE9
A
599 603Right-handed 310
Helix 46
AF1
A
650 663Right-handed alpha
Helix 47
AF2
A
672 681Right-handed alpha
Helix 48
AF3
A
699 703Right-handed 310
Helix 49
AF4
A
721 740Right-handed alpha
Helix 50
AF5
A
766 791Right-handed alpha
Helix 51
AF6
A
823 830Right-handed alpha
Helix 52
AF7
A
841 859Right-handed alpha
Helix 53
AF8
A
862 883Right-handed alpha
Helix 54
AF9
A
894 898Right-handed 310
Helix 55
AG1
A
901 909Right-handed alpha
Helix 56
AG2
A
933 948Right-handed alpha
Helix 57
AG3
A
952 961Right-handed alpha
Helix 58
AG4
A
968 975Right-handed alpha
Helix 59
AG5
A
986 1000Right-handed alpha
Helix 60
AG6
A
1015 1029Right-handed alpha
Helix 61
AG7
A
1034 1045Right-handed alpha
Helix 62
AG8
A
1045 1055Right-handed alpha
Helix 63
AG9
A
1060 1070Right-handed alpha
Helix 64
AH1
A
1075 1083Right-handed alpha
Helix 65
AH2
A
1083 1096Right-handed alpha
Helix 66
AH3
A
1112 1125Right-handed alpha
Helix 67
AH4
A
1125 1130Right-handed alpha
Helix 68
AH5
A
1141 1146Right-handed alpha
Helix 69
AH6
A
1212 1230Right-handed alpha
Helix 70
AH7
A
1232 1245Right-handed alpha
Helix 71
AH8
A
1250 1258Right-handed alpha
Helix 72
AH9
A
1287 1291Right-handed 310
Helix 73
AI1
A
1311 1328Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 7YOV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
309 310first strand
Strand 2
B
284 287parallel
Strand 3
A
382 385anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 204first strand
Strand 2
A
207 211anti-parallel
Strand 3
A
216 220anti-parallel
Strand 4
A
225 229anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
555 556first strand
Strand 2
A
539 540anti-parallel
Strand 3
A
682 685parallel
Strand 4
A
709 711anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
743 744first strand
Strand 2
A
754 761anti-parallel
Strand 3
A
632 639anti-parallel
Strand 4
A
802 804anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
807 810first strand
Strand 2
A
813 816anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1292 1294first strand
Strand 2
A
1169 1172anti-parallel
Strand 3
A
1339 1342anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il