Analysis of interatomic Contacts of Structural Units in PDB entry:
7YOY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YOY entry

There are 5 chains in PDB entry 7YOY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 PHE 88SER 223
E
 GLN 1SER 121
F
 GLN 2SER 114
I
 ASP 1LYS 111
J
 ASP 1LYS 111
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 7YOY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
127 134Right-handed alpha
Helix 2
AA2
C
148 155Right-handed alpha
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There are 13 sheets in PDB entry 7YOY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
110 111first strand
Strand 2
C
114 118anti-parallel
Strand 3
C
215 219anti-parallel
Strand 4
C
140 141anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
162 163first strand
Strand 2
C
193 195anti-parallel
Strand 3
C
203 204anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 6first strand
Strand 2
E
17 23anti-parallel
Strand 3
E
74 79anti-parallel
Strand 4
E
66 70anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
56 58first strand
Strand 2
E
44 50anti-parallel
Strand 3
E
33 38anti-parallel
Strand 4
E
88 96anti-parallel
Strand 5
E
107 108anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
56 58first strand
Strand 2
E
44 50anti-parallel
Strand 3
E
33 38anti-parallel
Strand 4
E
88 96anti-parallel
Strand 5
E
115 117anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
99 100first strand
Strand 2
E
103 104anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
6 7first strand
Strand 2
F
18 22anti-parallel
Strand 3
F
76 80anti-parallel
Strand 4
F
67 71anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
57 59first strand
Strand 2
F
46 51anti-parallel
Strand 3
F
34 39anti-parallel
Strand 4
F
89 95anti-parallel
Strand 5
F
108 110anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
4 6first strand
Strand 2
I
20 25anti-parallel
Strand 3
I
70 74anti-parallel
Strand 4
I
63 67anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
53 54first strand
Strand 2
I
45 49anti-parallel
Strand 3
I
33 38anti-parallel
Strand 4
I
85 93anti-parallel
Strand 5
I
98 100anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
10 11first strand
Strand 2
J
106 108parallel
Strand 3
J
85 92anti-parallel
Strand 4
J
33 37anti-parallel
Strand 5
J
45 49anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
10 11first strand
Strand 2
J
106 108parallel
Strand 3
J
85 92anti-parallel
Strand 4
J
99 101anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
19 24first strand
Strand 2
J
70 75anti-parallel
Strand 3
J
62 67anti-parallel
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