Analysis of interatomic Contacts of Structural Units in PDB entry:
7YP0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YP0 entry

There are 2 chains in PDB entry 7YP0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 9LYS 278
B
 MET 1LYS 278
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 7YP0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 26Right-handed alpha
Helix 2
AA2
A
28 41Right-handed alpha
Helix 3
AA3
A
93 105Right-handed alpha
Helix 4
AA4
A
140 156Right-handed alpha
Helix 5
AA5
A
157 165Right-handed 310
Helix 6
AA6
A
171 184Right-handed alpha
Helix 7
AA7
A
187 192Right-handed 310
Helix 8
AA8
A
194 214Right-handed alpha
Helix 9
AA9
A
215 218Right-handed 310
Helix 10
AB1
A
231 248Right-handed alpha
Helix 11
AB2
A
249 272Right-handed alpha
Helix 12
AB3
A
273 275Right-handed 310
Helix 13
AB4
B
21 26Right-handed alpha
Helix 14
AB5
B
28 41Right-handed alpha
Helix 15
AB6
B
52 56Right-handed 310
Helix 16
AB7
B
85 88Right-handed 310
Helix 17
AB8
B
93 105Right-handed alpha
Helix 18
AB9
B
140 156Right-handed alpha
Helix 19
AC1
B
157 162Right-handed 310
Helix 20
AC2
B
171 183Right-handed alpha
Helix 21
AC3
B
187 192Right-handed 310
Helix 22
AC4
B
194 214Right-handed alpha
Helix 23
AC5
B
215 218Right-handed 310
Helix 24
AC6
B
231 248Right-handed alpha
Helix 25
AC7
B
249 272Right-handed alpha
Helix 26
AC8
B
273 275Right-handed 310
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There are 2 sheets in PDB entry 7YP0. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 50first strand
Strand 2
A
11 16parallel
Strand 3
A
81 84anti-parallel
Strand 4
A
89 92anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 50first strand
Strand 2
B
11 16parallel
Strand 3
B
81 84anti-parallel
Strand 4
B
89 91anti-parallel
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