Analysis of interatomic Contacts of Structural Units in PDB entry:
7YP2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YP2 entry

There are 3 chains in PDB entry 7YP2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 361TYR 674
H
 GLU 1SER 120
L
 ASP 1LYS 112
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 7YP2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
369 383Right-handed alpha
Helix 2
AA2
A
389 391Right-handed 310
Helix 3
AA3
A
392 405Right-handed alpha
Helix 4
AA4
A
416 424Right-handed alpha
Helix 5
AA5
A
425 430Right-handed alpha
Helix 6
AA6
A
440 453Right-handed alpha
Helix 7
AA7
A
455 469Right-handed alpha
Helix 8
AA8
A
476 480Right-handed 310
Helix 9
AA9
A
487 492Right-handed alpha
Helix 10
AB1
A
502 517Right-handed alpha
Helix 11
AB2
A
520 524Right-handed 310
Helix 12
AB3
A
529 534Right-handed 310
Helix 13
AB4
A
537 539Right-handed 310
Helix 14
AB5
A
636 645Right-handed alpha
Helix 15
AB6
L
85 89Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 7YP2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
541 546first strand
Strand 2
A
550 555anti-parallel
Strand 3
A
578 583anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
566 567first strand
Strand 2
A
597 598parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
601 602first strand
Strand 2
A
667 670parallel
Strand 3
A
656 661anti-parallel
Strand 4
A
621 623anti-parallel
Strand 5
A
627 630anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
5 7first strand
Strand 2
H
17 23anti-parallel
Strand 3
H
78 84anti-parallel
Strand 4
H
68 73anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
116 118parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
58 60first strand
Strand 2
H
46 51anti-parallel
Strand 3
H
33 38anti-parallel
Strand 4
H
94 99anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
107 111parallel
Strand 3
L
91 95anti-parallel
Strand 4
L
40 44anti-parallel
Strand 5
L
51 55anti-parallel
Strand 6
L
59 60anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
19 24first strand
Strand 2
L
76 81anti-parallel
Strand 3
L
68 72anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il