Analysis of interatomic Contacts of Structural Units in PDB entry:
7YP3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YP3 entry

There are 7 chains in PDB entry 7YP3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER -1	ARG 417
B	SER -1	ARG 417
C	SER -1	ARG 417
D	SER -1	ARG 417
E	SER -1	ARG 417
F	SER -1	ARG 417
G	SER -1	ARG 417

There are185 helices in PDB entry 7YP3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	16	Right-handed alpha
Helix 2	AA2	A	17	27	Right-handed alpha
Helix 3	AA3	A	36	38	Right-handed 310
Helix 4	AA4	A	39	45	Right-handed alpha
Helix 5	AA5	A	58	66	Right-handed alpha
Helix 6	AA6	A	67	70	Right-handed 310
Helix 7	AA7	A	72	76	Right-handed 310
Helix 8	AA8	A	81	85	Right-handed 310
Helix 9	AA9	A	86	101	Right-handed alpha
Helix 10	AB1	A	101	108	Right-handed alpha
Helix 11	AB2	A	109	121	Right-handed alpha
Helix 12	AB3	A	132	142	Right-handed alpha
Helix 13	AB4	A	153	168	Right-handed alpha
Helix 14	AB5	A	169	174	Right-handed 310
Helix 15	AB6	A	176	189	Right-handed alpha
Helix 16	AB7	A	195	200	Right-handed alpha
Helix 17	AB8	A	208	212	Right-handed 310
Helix 18	AB9	A	234	239	Right-handed 310
Helix 19	AC1	A	264	274	Right-handed alpha
Helix 20	AC2	A	284	291	Right-handed alpha
Helix 21	AC3	A	305	310	Right-handed alpha
Helix 22	AC4	A	321	331	Right-handed alpha
Helix 23	AC5	A	344	355	Right-handed alpha
Helix 24	AC6	A	364	366	Right-handed 310
Helix 25	AC7	A	367	381	Right-handed alpha
Helix 26	AC8	A	381	398	Right-handed alpha
Helix 27	AC9	A	400	416	Right-handed alpha
Helix 28	AD1	B	10	16	Right-handed alpha
Helix 29	AD2	B	17	27	Right-handed alpha
Helix 30	AD3	B	36	38	Right-handed 310
Helix 31	AD4	B	39	45	Right-handed alpha
Helix 32	AD5	B	58	66	Right-handed alpha
Helix 33	AD6	B	67	70	Right-handed 310
Helix 34	AD7	B	72	76	Right-handed 310
Helix 35	AD8	B	81	85	Right-handed 310
Helix 36	AD9	B	86	101	Right-handed alpha
Helix 37	AE1	B	101	108	Right-handed alpha
Helix 38	AE2	B	109	121	Right-handed alpha
Helix 39	AE3	B	132	142	Right-handed alpha
Helix 40	AE4	B	153	168	Right-handed alpha
Helix 41	AE5	B	169	174	Right-handed 310
Helix 42	AE6	B	176	189	Right-handed alpha
Helix 43	AE7	B	195	200	Right-handed alpha
Helix 44	AE8	B	208	212	Right-handed 310
Helix 45	AE9	B	234	239	Right-handed 310
Helix 46	AF1	B	264	274	Right-handed alpha
Helix 47	AF2	B	284	291	Right-handed alpha
Helix 48	AF3	B	305	310	Right-handed alpha
Helix 49	AF4	B	321	331	Right-handed alpha
Helix 50	AF5	B	344	355	Right-handed alpha
Helix 51	AF6	B	364	366	Right-handed 310
Helix 52	AF7	B	367	381	Right-handed alpha
Helix 53	AF8	B	381	398	Right-handed alpha
Helix 54	AF9	B	400	416	Right-handed alpha
Helix 55	AG1	C	10	27	Right-handed alpha
Helix 56	AG2	C	36	38	Right-handed 310
Helix 57	AG3	C	39	45	Right-handed alpha
Helix 58	AG4	C	58	66	Right-handed alpha
Helix 59	AG5	C	72	76	Right-handed 310
Helix 60	AG6	C	81	85	Right-handed 310
Helix 61	AG7	C	86	101	Right-handed alpha
Helix 62	AG8	C	101	108	Right-handed alpha
Helix 63	AG9	C	109	121	Right-handed alpha
Helix 64	AH1	C	132	142	Right-handed alpha
Helix 65	AH2	C	153	168	Right-handed alpha
Helix 66	AH3	C	169	174	Right-handed 310
Helix 67	AH4	C	176	189	Right-handed alpha
Helix 68	AH5	C	195	200	Right-handed alpha
Helix 69	AH6	C	208	212	Right-handed 310
Helix 70	AH7	C	234	239	Right-handed 310
Helix 71	AH8	C	264	274	Right-handed alpha
Helix 72	AH9	C	284	291	Right-handed alpha
Helix 73	AI1	C	305	310	Right-handed alpha
Helix 74	AI2	C	321	331	Right-handed alpha
Helix 75	AI3	C	344	355	Right-handed alpha
Helix 76	AI4	C	364	366	Right-handed 310
Helix 77	AI5	C	367	381	Right-handed alpha
Helix 78	AI6	C	381	398	Right-handed alpha
Helix 79	AI7	C	400	416	Right-handed alpha
Helix 80	AI8	D	10	27	Right-handed alpha
Helix 81	AI9	D	36	38	Right-handed 310
Helix 82	AJ1	D	39	45	Right-handed alpha
Helix 83	AJ2	D	58	66	Right-handed alpha
Helix 84	AJ3	D	67	70	Right-handed 310
Helix 85	AJ4	D	72	76	Right-handed 310
Helix 86	AJ5	D	81	85	Right-handed 310
Helix 87	AJ6	D	86	101	Right-handed alpha
Helix 88	AJ7	D	101	107	Right-handed alpha
Helix 89	AJ8	D	109	121	Right-handed alpha
Helix 90	AJ9	D	132	142	Right-handed alpha
Helix 91	AK1	D	153	168	Right-handed alpha
Helix 92	AK2	D	169	174	Right-handed 310
Helix 93	AK3	D	176	189	Right-handed alpha
Helix 94	AK4	D	195	200	Right-handed alpha
Helix 95	AK5	D	208	212	Right-handed 310
Helix 96	AK6	D	234	239	Right-handed 310
Helix 97	AK7	D	264	274	Right-handed alpha
Helix 98	AK8	D	284	291	Right-handed alpha
Helix 99	AK9	D	305	310	Right-handed alpha
Helix 100	AL1	D	321	331	Right-handed alpha
Helix 101	AL2	D	344	355	Right-handed alpha
Helix 102	AL3	D	364	366	Right-handed 310
Helix 103	AL4	D	367	381	Right-handed alpha
Helix 104	AL5	D	381	398	Right-handed alpha
Helix 105	AL6	D	400	416	Right-handed alpha
Helix 106	AL7	E	10	16	Right-handed alpha
Helix 107	AL8	E	17	27	Right-handed alpha
Helix 108	AL9	E	36	38	Right-handed 310
Helix 109	AM1	E	39	45	Right-handed alpha
Helix 110	AM2	E	58	66	Right-handed alpha
Helix 111	AM3	E	67	70	Right-handed 310
Helix 112	AM4	E	72	76	Right-handed 310
Helix 113	AM5	E	81	85	Right-handed 310
Helix 114	AM6	E	86	101	Right-handed alpha
Helix 115	AM7	E	101	108	Right-handed alpha
Helix 116	AM8	E	109	121	Right-handed alpha
Helix 117	AM9	E	132	142	Right-handed alpha
Helix 118	AN1	E	153	168	Right-handed alpha
Helix 119	AN2	E	169	174	Right-handed 310
Helix 120	AN3	E	176	189	Right-handed alpha
Helix 121	AN4	E	195	200	Right-handed alpha
Helix 122	AN5	E	208	212	Right-handed 310
Helix 123	AN6	E	234	239	Right-handed 310
Helix 124	AN7	E	264	274	Right-handed alpha
Helix 125	AN8	E	284	291	Right-handed alpha
Helix 126	AN9	E	305	310	Right-handed alpha
Helix 127	AO1	E	321	332	Right-handed alpha
Helix 128	AO2	E	344	355	Right-handed alpha
Helix 129	AO3	E	364	366	Right-handed 310
Helix 130	AO4	E	367	381	Right-handed alpha
Helix 131	AO5	E	381	398	Right-handed alpha
Helix 132	AO6	E	400	416	Right-handed alpha
Helix 133	AO7	F	10	16	Right-handed alpha
Helix 134	AO8	F	17	27	Right-handed alpha
Helix 135	AO9	F	36	38	Right-handed 310
Helix 136	AP1	F	39	45	Right-handed alpha
Helix 137	AP2	F	58	66	Right-handed alpha
Helix 138	AP3	F	72	76	Right-handed 310
Helix 139	AP4	F	81	85	Right-handed 310
Helix 140	AP5	F	86	101	Right-handed alpha
Helix 141	AP6	F	101	108	Right-handed alpha
Helix 142	AP7	F	109	121	Right-handed alpha
Helix 143	AP8	F	132	142	Right-handed alpha
Helix 144	AP9	F	153	168	Right-handed alpha
Helix 145	AQ1	F	169	174	Right-handed 310
Helix 146	AQ2	F	176	189	Right-handed alpha
Helix 147	AQ3	F	195	200	Right-handed alpha
Helix 148	AQ4	F	208	212	Right-handed 310
Helix 149	AQ5	F	234	239	Right-handed 310
Helix 150	AQ6	F	251	258	Right-handed alpha
Helix 151	AQ7	F	264	274	Right-handed alpha
Helix 152	AQ8	F	284	291	Right-handed alpha
Helix 153	AQ9	F	305	310	Right-handed alpha
Helix 154	AR1	F	321	331	Right-handed alpha
Helix 155	AR2	F	344	355	Right-handed alpha
Helix 156	AR3	F	364	366	Right-handed 310
Helix 157	AR4	F	367	381	Right-handed alpha
Helix 158	AR5	F	381	398	Right-handed alpha
Helix 159	AR6	F	400	416	Right-handed alpha
Helix 160	AR7	G	10	27	Right-handed alpha
Helix 161	AR8	G	36	38	Right-handed 310
Helix 162	AR9	G	39	45	Right-handed alpha
Helix 163	AS1	G	58	66	Right-handed alpha
Helix 164	AS2	G	67	70	Right-handed 310
Helix 165	AS3	G	72	76	Right-handed 310
Helix 166	AS4	G	81	85	Right-handed 310
Helix 167	AS5	G	86	101	Right-handed alpha
Helix 168	AS6	G	101	107	Right-handed alpha
Helix 169	AS7	G	109	121	Right-handed alpha
Helix 170	AS8	G	132	142	Right-handed alpha
Helix 171	AS9	G	153	168	Right-handed alpha
Helix 172	AT1	G	169	174	Right-handed 310
Helix 173	AT2	G	176	189	Right-handed alpha
Helix 174	AT3	G	195	200	Right-handed alpha
Helix 175	AT4	G	208	212	Right-handed 310
Helix 176	AT5	G	234	239	Right-handed 310
Helix 177	AT6	G	264	274	Right-handed alpha
Helix 178	AT7	G	284	291	Right-handed alpha
Helix 179	AT8	G	305	310	Right-handed alpha
Helix 180	AT9	G	321	332	Right-handed alpha
Helix 181	AU1	G	344	355	Right-handed alpha
Helix 182	AU2	G	364	366	Right-handed 310
Helix 183	AU3	G	367	381	Right-handed alpha
Helix 184	AU4	G	381	398	Right-handed alpha
Helix 185	AU5	G	400	416	Right-handed alpha

There are 14 sheets in PDB entry 7YP3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	52	first strand
Strand 2	A	30	35	parallel
Strand 3	A	2	6	parallel
Strand 4	A	124	127	parallel
Strand 5	A	144	149	parallel
Strand 6	A	202	205	parallel
Strand 7	A	219	221	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	301	first strand
Strand 2	A	278	282	parallel
Strand 3	A	245	249	parallel
Strand 4	A	315	317	parallel
Strand 5	A	335	339	parallel
Strand 6	A	358	362	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	52	first strand
Strand 2	B	30	35	parallel
Strand 3	B	2	6	parallel
Strand 4	B	124	127	parallel
Strand 5	B	144	149	parallel
Strand 6	B	202	205	parallel
Strand 7	B	219	221	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	301	first strand
Strand 2	B	278	282	parallel
Strand 3	B	245	249	parallel
Strand 4	B	315	317	parallel
Strand 5	B	335	339	parallel
Strand 6	B	358	362	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	52	first strand
Strand 2	C	30	35	parallel
Strand 3	C	2	6	parallel
Strand 4	C	124	127	parallel
Strand 5	C	144	149	parallel
Strand 6	C	202	205	parallel
Strand 7	C	219	221	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	298	301	first strand
Strand 2	C	278	282	parallel
Strand 3	C	245	249	parallel
Strand 4	C	315	317	parallel
Strand 5	C	335	339	parallel
Strand 6	C	358	362	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	52	first strand
Strand 2	D	30	35	parallel
Strand 3	D	2	6	parallel
Strand 4	D	124	127	parallel
Strand 5	D	144	149	parallel
Strand 6	D	202	205	parallel
Strand 7	D	219	221	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	298	301	first strand
Strand 2	D	278	282	parallel
Strand 3	D	245	249	parallel
Strand 4	D	315	317	parallel
Strand 5	D	335	339	parallel
Strand 6	D	358	362	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	49	52	first strand
Strand 2	E	30	35	parallel
Strand 3	E	2	6	parallel
Strand 4	E	124	127	parallel
Strand 5	E	144	149	parallel
Strand 6	E	202	205	parallel
Strand 7	E	219	221	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	298	301	first strand
Strand 2	E	278	282	parallel
Strand 3	E	245	249	parallel
Strand 4	E	315	317	parallel
Strand 5	E	335	339	parallel
Strand 6	E	358	362	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	49	52	first strand
Strand 2	F	30	35	parallel
Strand 3	F	2	6	parallel
Strand 4	F	124	127	parallel
Strand 5	F	144	149	parallel
Strand 6	F	202	205	parallel
Strand 7	F	219	221	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	298	301	first strand
Strand 2	F	278	282	parallel
Strand 3	F	245	249	parallel
Strand 4	F	315	317	parallel
Strand 5	F	335	339	parallel
Strand 6	F	358	362	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	49	52	first strand
Strand 2	G	30	35	parallel
Strand 3	G	2	6	parallel
Strand 4	G	124	127	parallel
Strand 5	G	144	149	parallel
Strand 6	G	202	205	parallel
Strand 7	G	219	221	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	298	301	first strand
Strand 2	G	278	282	parallel
Strand 3	G	245	249	parallel
Strand 4	G	315	317	parallel
Strand 5	G	335	339	parallel
Strand 6	G	358	362	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YP3

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YP3