Analysis of interatomic Contacts of Structural Units in PDB entry:
7YP5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YP5 entry

There are 2 chains in PDB entry 7YP5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1ARG 417
B
 SER -1ARG 417
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 7YP5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 17Right-handed alpha
Helix 2
AA2
A
17 27Right-handed alpha
Helix 3
AA3
A
36 38Right-handed 310
Helix 4
AA4
A
39 45Right-handed alpha
Helix 5
AA5
A
58 63Right-handed alpha
Helix 6
AA6
A
81 85Right-handed 310
Helix 7
AA7
A
86 101Right-handed alpha
Helix 8
AA8
A
101 107Right-handed alpha
Helix 9
AA9
A
109 121Right-handed alpha
Helix 10
AB1
A
132 141Right-handed alpha
Helix 11
AB2
A
153 168Right-handed alpha
Helix 12
AB3
A
170 174Right-handed 310
Helix 13
AB4
A
176 188Right-handed alpha
Helix 14
AB5
A
195 200Right-handed alpha
Helix 15
AB6
A
208 212Right-handed 310
Helix 16
AB7
A
234 238Right-handed 310
Helix 17
AB8
A
253 259Right-handed alpha
Helix 18
AB9
A
264 273Right-handed alpha
Helix 19
AC1
A
284 290Right-handed alpha
Helix 20
AC2
A
305 310Right-handed alpha
Helix 21
AC3
A
321 332Right-handed alpha
Helix 22
AC4
A
344 355Right-handed alpha
Helix 23
AC5
A
364 366Right-handed 310
Helix 24
AC6
A
367 381Right-handed alpha
Helix 25
AC7
A
381 398Right-handed alpha
Helix 26
AC8
A
400 415Right-handed alpha
Helix 27
AC9
B
10 27Right-handed alpha
Helix 28
AD1
B
36 38Right-handed 310
Helix 29
AD2
B
39 45Right-handed alpha
Helix 30
AD3
B
58 63Right-handed alpha
Helix 31
AD4
B
81 85Right-handed 310
Helix 32
AD5
B
86 101Right-handed alpha
Helix 33
AD6
B
101 107Right-handed alpha
Helix 34
AD7
B
109 121Right-handed alpha
Helix 35
AD8
B
132 141Right-handed alpha
Helix 36
AD9
B
153 168Right-handed alpha
Helix 37
AE1
B
170 174Right-handed 310
Helix 38
AE2
B
176 188Right-handed alpha
Helix 39
AE3
B
195 200Right-handed alpha
Helix 40
AE4
B
208 212Right-handed 310
Helix 41
AE5
B
234 238Right-handed 310
Helix 42
AE6
B
253 259Right-handed alpha
Helix 43
AE7
B
264 273Right-handed alpha
Helix 44
AE8
B
284 290Right-handed alpha
Helix 45
AE9
B
305 310Right-handed alpha
Helix 46
AF1
B
321 331Right-handed alpha
Helix 47
AF2
B
344 355Right-handed alpha
Helix 48
AF3
B
364 366Right-handed 310
Helix 49
AF4
B
367 381Right-handed alpha
Helix 50
AF5
B
381 398Right-handed alpha
Helix 51
AF6
B
400 416Right-handed alpha
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There are 4 sheets in PDB entry 7YP5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
30 35parallel
Strand 3
A
2 6parallel
Strand 4
A
124 127parallel
Strand 5
A
144 149parallel
Strand 6
A
202 205parallel
Strand 7
A
219 221parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 301first strand
Strand 2
A
278 282parallel
Strand 3
A
245 249parallel
Strand 4
A
315 317parallel
Strand 5
A
335 339parallel
Strand 6
A
358 362parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 52first strand
Strand 2
B
30 35parallel
Strand 3
B
2 6parallel
Strand 4
B
124 127parallel
Strand 5
B
144 149parallel
Strand 6
B
202 205parallel
Strand 7
B
219 221parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
298 301first strand
Strand 2
B
278 282parallel
Strand 3
B
245 249parallel
Strand 4
B
315 317parallel
Strand 5
B
335 339parallel
Strand 6
B
358 362parallel
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