Analysis of interatomic Contacts of Structural Units in PDB entry:
7YP6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YP6 entry

There are 3 chains in PDB entry 7YP6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER -1	ARG 417
B	SER -1	ARG 417
C	HIS 0	ARG 417

There are 75 helices in PDB entry 7YP6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	16	Right-handed alpha
Helix 2	AA2	A	17	27	Right-handed alpha
Helix 3	AA3	A	36	38	Right-handed 310
Helix 4	AA4	A	39	45	Right-handed alpha
Helix 5	AA5	A	72	76	Right-handed 310
Helix 6	AA6	A	81	85	Right-handed 310
Helix 7	AA7	A	86	101	Right-handed alpha
Helix 8	AA8	A	101	107	Right-handed alpha
Helix 9	AA9	A	109	121	Right-handed alpha
Helix 10	AB1	A	132	142	Right-handed alpha
Helix 11	AB2	A	153	168	Right-handed alpha
Helix 12	AB3	A	169	174	Right-handed 310
Helix 13	AB4	A	176	189	Right-handed alpha
Helix 14	AB5	A	195	200	Right-handed alpha
Helix 15	AB6	A	208	212	Right-handed 310
Helix 16	AB7	A	234	239	Right-handed 310
Helix 17	AB8	A	251	259	Right-handed alpha
Helix 18	AB9	A	264	274	Right-handed alpha
Helix 19	AC1	A	284	290	Right-handed alpha
Helix 20	AC2	A	305	310	Right-handed alpha
Helix 21	AC3	A	321	332	Right-handed alpha
Helix 22	AC4	A	344	355	Right-handed alpha
Helix 23	AC5	A	364	366	Right-handed 310
Helix 24	AC6	A	367	381	Right-handed alpha
Helix 25	AC7	A	381	398	Right-handed alpha
Helix 26	AC8	A	400	416	Right-handed alpha
Helix 27	AC9	B	10	16	Right-handed alpha
Helix 28	AD1	B	17	27	Right-handed alpha
Helix 29	AD2	B	36	38	Right-handed 310
Helix 30	AD3	B	39	45	Right-handed alpha
Helix 31	AD4	B	58	66	Right-handed alpha
Helix 32	AD5	B	72	76	Right-handed 310
Helix 33	AD6	B	81	85	Right-handed 310
Helix 34	AD7	B	86	101	Right-handed alpha
Helix 35	AD8	B	101	107	Right-handed alpha
Helix 36	AD9	B	109	121	Right-handed alpha
Helix 37	AE1	B	132	142	Right-handed alpha
Helix 38	AE2	B	153	168	Right-handed alpha
Helix 39	AE3	B	169	174	Right-handed 310
Helix 40	AE4	B	176	189	Right-handed alpha
Helix 41	AE5	B	195	200	Right-handed alpha
Helix 42	AE6	B	208	212	Right-handed 310
Helix 43	AE7	B	234	239	Right-handed 310
Helix 44	AE8	B	251	259	Right-handed alpha
Helix 45	AE9	B	264	274	Right-handed alpha
Helix 46	AF1	B	284	290	Right-handed alpha
Helix 47	AF2	B	305	310	Right-handed alpha
Helix 48	AF3	B	321	331	Right-handed alpha
Helix 49	AF4	B	344	355	Right-handed alpha
Helix 50	AF5	B	364	366	Right-handed 310
Helix 51	AF6	B	367	381	Right-handed alpha
Helix 52	AF7	B	381	398	Right-handed alpha
Helix 53	AF8	B	400	416	Right-handed alpha
Helix 54	AF9	C	10	16	Right-handed alpha
Helix 55	AG1	C	17	27	Right-handed alpha
Helix 56	AG2	C	36	38	Right-handed 310
Helix 57	AG3	C	39	45	Right-handed alpha
Helix 58	AG4	C	72	76	Right-handed 310
Helix 59	AG5	C	81	85	Right-handed 310
Helix 60	AG6	C	86	101	Right-handed alpha
Helix 61	AG7	C	101	107	Right-handed alpha
Helix 62	AG8	C	109	121	Right-handed alpha
Helix 63	AG9	C	132	142	Right-handed alpha
Helix 64	AH1	C	153	168	Right-handed alpha
Helix 65	AH2	C	169	174	Right-handed 310
Helix 66	AH3	C	176	189	Right-handed alpha
Helix 67	AH4	C	195	200	Right-handed alpha
Helix 68	AH5	C	208	212	Right-handed 310
Helix 69	AH6	C	264	274	Right-handed alpha
Helix 70	AH7	C	305	310	Right-handed alpha
Helix 71	AH8	C	321	331	Right-handed alpha
Helix 72	AH9	C	344	355	Right-handed alpha
Helix 73	AI1	C	369	381	Right-handed alpha
Helix 74	AI2	C	381	398	Right-handed alpha
Helix 75	AI3	C	400	416	Right-handed alpha

There are 7 sheets in PDB entry 7YP6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	52	first strand
Strand 2	A	30	35	parallel
Strand 3	A	2	6	parallel
Strand 4	A	124	127	parallel
Strand 5	A	144	149	parallel
Strand 6	A	202	205	parallel
Strand 7	A	219	221	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	301	first strand
Strand 2	A	278	282	parallel
Strand 3	A	245	249	parallel
Strand 4	A	315	317	parallel
Strand 5	A	335	339	parallel
Strand 6	A	358	362	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	52	first strand
Strand 2	B	30	35	parallel
Strand 3	B	2	6	parallel
Strand 4	B	124	127	parallel
Strand 5	B	144	149	parallel
Strand 6	B	202	205	parallel
Strand 7	B	219	221	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	301	first strand
Strand 2	B	278	282	parallel
Strand 3	B	245	249	parallel
Strand 4	B	315	317	parallel
Strand 5	B	335	339	parallel
Strand 6	B	358	362	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	52	first strand
Strand 2	C	30	35	parallel
Strand 3	C	2	6	parallel
Strand 4	C	124	127	parallel
Strand 5	C	144	149	parallel
Strand 6	C	202	205	parallel
Strand 7	C	219	221	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	279	282	first strand
Strand 2	C	298	301	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	335	339	first strand
Strand 2	C	358	362	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YP6

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YP6