Analysis of interatomic Contacts of Structural Units in PDB entry:
7YP7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YP7 entry

There are 5 chains in PDB entry 7YP7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 9	LEU 394
B	GLN 1	ASN 340
G	ASN 5	ARG 62
N	GLN 1	SER 128
R	ALA 619	TYR 885

There are 23 helices in PDB entry 7YP7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	38	Right-handed alpha
Helix 2	AA2	A	264	278	Right-handed alpha
Helix 3	AA3	A	333	343	Right-handed alpha
Helix 4	AA4	A	368	371	Right-handed 310
Helix 5	AA5	A	372	391	Right-handed alpha
Helix 6	AA6	B	3	25	Right-handed alpha
Helix 7	AA7	B	29	34	Right-handed alpha
Helix 8	AA8	G	6	23	Right-handed alpha
Helix 9	AA9	G	29	44	Right-handed alpha
Helix 10	AB1	R	622	644	Right-handed alpha
Helix 11	AB2	R	651	674	Right-handed alpha
Helix 12	AB3	R	683	716	Right-handed alpha
Helix 13	AB4	R	726	735	Right-handed alpha
Helix 14	AB5	R	737	748	Right-handed alpha
Helix 15	AB6	R	775	782	Right-handed alpha
Helix 16	AB7	R	782	791	Right-handed alpha
Helix 17	AB8	R	794	808	Right-handed alpha
Helix 18	AB9	R	823	834	Right-handed alpha
Helix 19	AC1	R	835	838	Right-handed 310
Helix 20	AC2	R	839	845	Right-handed alpha
Helix 21	AC3	R	851	860	Right-handed alpha
Helix 22	AC4	R	862	872	Right-handed alpha
Helix 23	AC5	R	875	883	Right-handed alpha

There are 10 sheets in PDB entry 7YP7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	213	first strand
Strand 2	A	218	224	anti-parallel
Strand 3	A	42	47	parallel
Strand 4	A	243	248	parallel
Strand 5	A	286	291	parallel
Strand 6	A	359	363	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	90	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	112	116	anti-parallel
Strand 3	B	121	122	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	153	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	176	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	307	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	17	25	anti-parallel
Strand 3	N	78	84	anti-parallel
Strand 4	N	69	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	11	12	first strand
Strand 2	N	122	126	parallel
Strand 3	N	92	95	anti-parallel
Strand 4	N	34	40	anti-parallel
Strand 5	N	44	51	anti-parallel
Strand 6	N	58	60	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YP7

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YP7