Analysis of interatomic Contacts of Structural Units in PDB entry:
7YP9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YP9 entry

There are 8 chains in PDB entry 7YP9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 8	LEU 234
B	SER 4	VAL 232
C	VAL 2	GLU 1340
D	PHE 17	ARG 1373
E	ARG 3	GLU 74
F	T -12	C 12
G	G -12	A 12
H	G -10	U 0

There are 90 helices in PDB entry 7YP9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	50	Right-handed alpha
Helix 2	AA2	A	77	87	Right-handed alpha
Helix 3	AA3	A	113	115	Right-handed 310
Helix 4	AA4	A	212	228	Right-handed alpha
Helix 5	AA5	A	228	234	Right-handed alpha
Helix 6	AA6	B	34	50	Right-handed alpha
Helix 7	AA7	B	77	82	Right-handed alpha
Helix 8	AA8	B	82	87	Right-handed alpha
Helix 9	AA9	B	212	227	Right-handed alpha
Helix 10	AB1	C	31	40	Right-handed alpha
Helix 11	AB2	C	49	57	Right-handed alpha
Helix 12	AB3	C	81	89	Right-handed alpha
Helix 13	AB4	C	207	212	Right-handed alpha
Helix 14	AB5	C	217	225	Right-handed alpha
Helix 15	AB6	C	271	278	Right-handed alpha
Helix 16	AB7	C	288	294	Right-handed alpha
Helix 17	AB8	C	318	329	Right-handed alpha
Helix 18	AB9	C	345	350	Right-handed alpha
Helix 19	AC1	C	351	353	Right-handed 310
Helix 20	AC2	C	359	369	Right-handed alpha
Helix 21	AC3	C	378	389	Right-handed alpha
Helix 22	AC4	C	400	408	Right-handed alpha
Helix 23	AC5	C	421	437	Right-handed alpha
Helix 24	AC6	C	447	449	Right-handed 310
Helix 25	AC7	C	455	471	Right-handed alpha
Helix 26	AC8	C	471	482	Right-handed alpha
Helix 27	AC9	C	494	507	Right-handed alpha
Helix 28	AD1	C	519	528	Right-handed alpha
Helix 29	AD2	C	544	549	Right-handed alpha
Helix 30	AD3	C	607	614	Right-handed alpha
Helix 31	AD4	C	675	687	Right-handed alpha
Helix 32	AD5	C	704	712	Right-handed alpha
Helix 33	AD6	C	819	825	Right-handed alpha
Helix 34	AD7	C	944	969	Right-handed alpha
Helix 35	AD8	C	1018	1038	Right-handed alpha
Helix 36	AD9	C	1109	1134	Right-handed alpha
Helix 37	AE1	C	1137	1149	Right-handed alpha
Helix 38	AE2	C	1165	1176	Right-handed alpha
Helix 39	AE3	C	1191	1200	Right-handed alpha
Helix 40	AE4	C	1271	1279	Right-handed alpha
Helix 41	AE5	C	1283	1293	Right-handed alpha
Helix 42	AE6	C	1297	1309	Right-handed alpha
Helix 43	AE7	C	1320	1332	Right-handed alpha
Helix 44	AE8	D	26	33	Right-handed alpha
Helix 45	AE9	D	94	99	Right-handed alpha
Helix 46	AF1	D	113	118	Right-handed alpha
Helix 47	AF2	D	122	128	Right-handed alpha
Helix 48	AF3	D	131	136	Right-handed alpha
Helix 49	AF4	D	164	172	Right-handed alpha
Helix 50	AF5	D	180	192	Right-handed alpha
Helix 51	AF6	D	193	206	Right-handed alpha
Helix 52	AF7	D	211	226	Right-handed alpha
Helix 53	AF8	D	226	231	Right-handed alpha
Helix 54	AF9	D	233	237	Right-handed 310
Helix 55	AG1	D	265	284	Right-handed alpha
Helix 56	AG2	D	288	307	Right-handed alpha
Helix 57	AG3	D	336	341	Right-handed alpha
Helix 58	AG4	D	370	377	Right-handed alpha
Helix 59	AG5	D	377	389	Right-handed alpha
Helix 60	AG6	D	394	404	Right-handed alpha
Helix 61	AG7	D	406	416	Right-handed alpha
Helix 62	AG8	D	430	432	Right-handed 310
Helix 63	AG9	D	453	458	Right-handed alpha
Helix 64	AH1	D	473	483	Right-handed alpha
Helix 65	AH2	D	504	514	Right-handed alpha
Helix 66	AH3	D	531	539	Right-handed alpha
Helix 67	AH4	D	574	580	Right-handed alpha
Helix 68	AH5	D	600	612	Right-handed alpha
Helix 69	AH6	D	614	636	Right-handed alpha
Helix 70	AH7	D	647	671	Right-handed alpha
Helix 71	AH8	D	674	703	Right-handed alpha
Helix 72	AH9	D	720	728	Right-handed alpha
Helix 73	AI1	D	735	741	Right-handed alpha
Helix 74	AI2	D	768	805	Right-handed alpha
Helix 75	AI3	D	834	839	Right-handed alpha
Helix 76	AI4	D	865	876	Right-handed alpha
Helix 77	AI5	D	916	925	Right-handed alpha
Helix 78	AI6	D	1137	1146	Right-handed alpha
Helix 79	AI7	D	1216	1223	Right-handed alpha
Helix 80	AI8	D	1225	1242	Right-handed alpha
Helix 81	AI9	D	1250	1259	Right-handed alpha
Helix 82	AJ1	D	1282	1295	Right-handed alpha
Helix 83	AJ2	D	1318	1326	Right-handed alpha
Helix 84	AJ3	D	1327	1337	Right-handed alpha
Helix 85	AJ4	D	1346	1353	Right-handed alpha
Helix 86	AJ5	D	1361	1373	Right-handed alpha
Helix 87	AJ6	E	6	14	Right-handed alpha
Helix 88	AJ7	E	15	30	Right-handed alpha
Helix 89	AJ8	E	45	57	Right-handed alpha
Helix 90	AJ9	E	64	74	Right-handed alpha

There are 39 sheets in PDB entry 7YP9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	17	first strand
Strand 2	A	23	32	anti-parallel
Strand 3	A	198	207	anti-parallel
Strand 4	A	180	189	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	101	first strand
Strand 2	A	142	149	anti-parallel
Strand 3	A	53	61	anti-parallel
Strand 4	A	170	172	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	91	first strand
Strand 2	A	122	123	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	105	first strand
Strand 2	A	139	140	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	111	first strand
Strand 2	A	129	133	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	153	first strand
Strand 2	A	175	177	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	17	first strand
Strand 2	B	23	31	anti-parallel
Strand 3	B	198	207	anti-parallel
Strand 4	B	180	190	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	56	first strand
Strand 2	B	142	150	anti-parallel
Strand 3	B	98	102	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	91	first strand
Strand 2	B	122	123	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	14	first strand
Strand 2	C	1182	1183	parallel
Strand 3	C	700	701	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	67	75	anti-parallel
Strand 3	C	93	103	anti-parallel
Strand 4	C	119	128	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	137	first strand
Strand 2	C	142	145	anti-parallel
Strand 3	C	512	513	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	151	first strand
Strand 2	C	451	453	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	159	first strand
Strand 2	C	172	177	anti-parallel
Strand 3	C	184	187	anti-parallel
Strand 4	C	195	198	anti-parallel
Strand 5	C	204	205	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	230	231	first strand
Strand 2	C	238	239	anti-parallel
Strand 3	C	285	286	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	257	first strand
Strand 2	C	260	263	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	529	531	first strand
Strand 2	C	572	574	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	587	595	anti-parallel
Strand 3	C	598	606	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	587	595	anti-parallel
Strand 3	C	652	654	anti-parallel
Strand 4	C	616	617	parallel
Strand 5	C	633	637	anti-parallel
Strand 6	C	642	646	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	716	717	first strand
Strand 2	C	782	785	anti-parallel
Strand 3	C	768	769	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	722	727	first strand
Strand 2	C	731	736	anti-parallel
Strand 3	C	749	752	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	757	758	first strand
Strand 2	C	764	765	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	789	790	first strand
Strand 2	C	793	794	anti-parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	798	804	first strand
Strand 2	C	1096	1098	parallel
Strand 3	C	816	818	anti-parallel
Strand 4	C	1074	1079	parallel
Strand 5	C	1065	1068	anti-parallel
Strand 6	C	1229	1234	anti-parallel
Strand 7	C	798	804	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	830	839	first strand
Strand 2	C	1049	1058	anti-parallel
Strand 3	C	932	934	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1268	1269	first strand
Strand 2	D	346	347	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1335	1339	first strand
Strand 2	D	20	24	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	37	first strand
Strand 2	D	102	111	parallel
Strand 3	D	239	244	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	161	first strand
Strand 2	D	143	146	anti-parallel
Strand 3	D	178	179	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	352	354	first strand
Strand 2	D	465	469	anti-parallel
Strand 3	D	421	424	anti-parallel
Strand 4	D	434	437	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	367	369	first strand
Strand 2	D	440	442	parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	526	527	first strand
Strand 2	D	547	550	parallel
Strand 3	D	571	573	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	552	554	first strand
Strand 2	D	566	568	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	820	822	first strand
Strand 2	D	880	882	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	982	985	first strand
Strand 2	D	956	960	anti-parallel
Strand 3	D	1010	1011	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1002	1003	first strand
Strand 2	D	1018	1019	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1035	1038	first strand
Strand 2	D	1077	1080	anti-parallel
Strand 3	D	1098	1099	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1046	1049	first strand
Strand 2	D	1058	1061	anti-parallel
Strand 3	D	1106	1107	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1279	1281	first strand
Strand 2	D	1263	1266	anti-parallel
Strand 3	D	1302	1305	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YP9

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YP9