Analysis of interatomic Contacts of Structural Units in PDB entry:
7YPB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YPB entry

There are 9 chains in PDB entry 7YPB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 7	LEU 234
B	SER 4	ASP 233
C	TYR 3	ASP 1341
D	GLU 16	ARG 1373
E	ARG 3	GLN 81
F	C -10	C 14
G	G -14	G 10
H	C -18	G -14
I	C 14	G 18

There are 91 helices in PDB entry 7YPB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	50	Right-handed alpha
Helix 2	AA2	A	77	87	Right-handed alpha
Helix 3	AA3	A	111	115	Right-handed 310
Helix 4	AA4	A	212	228	Right-handed alpha
Helix 5	AA5	A	229	231	Right-handed 310
Helix 6	AA6	B	34	50	Right-handed alpha
Helix 7	AA7	B	77	87	Right-handed alpha
Helix 8	AA8	B	111	115	Right-handed 310
Helix 9	AA9	B	212	227	Right-handed alpha
Helix 10	AB1	C	28	40	Right-handed alpha
Helix 11	AB2	C	48	55	Right-handed alpha
Helix 12	AB3	C	81	89	Right-handed alpha
Helix 13	AB4	C	206	212	Right-handed alpha
Helix 14	AB5	C	217	225	Right-handed alpha
Helix 15	AB6	C	270	281	Right-handed alpha
Helix 16	AB7	C	288	292	Right-handed 310
Helix 17	AB8	C	318	329	Right-handed alpha
Helix 18	AB9	C	345	351	Right-handed alpha
Helix 19	AC1	C	358	371	Right-handed alpha
Helix 20	AC2	C	378	390	Right-handed alpha
Helix 21	AC3	C	398	408	Right-handed alpha
Helix 22	AC4	C	421	438	Right-handed alpha
Helix 23	AC5	C	455	480	Right-handed alpha
Helix 24	AC6	C	495	506	Right-handed alpha
Helix 25	AC7	C	519	528	Right-handed alpha
Helix 26	AC8	C	544	549	Right-handed alpha
Helix 27	AC9	C	670	674	Right-handed 310
Helix 28	AD1	C	675	687	Right-handed alpha
Helix 29	AD2	C	704	712	Right-handed alpha
Helix 30	AD3	C	819	825	Right-handed alpha
Helix 31	AD4	C	860	865	Right-handed alpha
Helix 32	AD5	C	944	979	Right-handed alpha
Helix 33	AD6	C	1006	1037	Right-handed alpha
Helix 34	AD7	C	1101	1106	Right-handed alpha
Helix 35	AD8	C	1109	1130	Right-handed alpha
Helix 36	AD9	C	1138	1149	Right-handed alpha
Helix 37	AE1	C	1160	1164	Right-handed 310
Helix 38	AE2	C	1165	1176	Right-handed alpha
Helix 39	AE3	C	1191	1202	Right-handed alpha
Helix 40	AE4	C	1238	1242	Right-handed 310
Helix 41	AE5	C	1271	1281	Right-handed alpha
Helix 42	AE6	C	1283	1292	Right-handed alpha
Helix 43	AE7	C	1299	1311	Right-handed alpha
Helix 44	AE8	C	1320	1331	Right-handed alpha
Helix 45	AE9	D	26	34	Right-handed alpha
Helix 46	AF1	D	77	81	Right-handed 310
Helix 47	AF2	D	96	100	Right-handed 310
Helix 48	AF3	D	122	128	Right-handed alpha
Helix 49	AF4	D	131	140	Right-handed alpha
Helix 50	AF5	D	163	172	Right-handed alpha
Helix 51	AF6	D	181	192	Right-handed alpha
Helix 52	AF7	D	194	204	Right-handed alpha
Helix 53	AF8	D	205	207	Right-handed 310
Helix 54	AF9	D	210	230	Right-handed alpha
Helix 55	AG1	D	233	238	Right-handed 310
Helix 56	AG2	D	263	284	Right-handed alpha
Helix 57	AG3	D	288	308	Right-handed alpha
Helix 58	AG4	D	336	341	Right-handed alpha
Helix 59	AG5	D	370	376	Right-handed alpha
Helix 60	AG6	D	377	388	Right-handed alpha
Helix 61	AG7	D	393	402	Right-handed alpha
Helix 62	AG8	D	430	432	Right-handed 310
Helix 63	AG9	D	450	452	Right-handed 310
Helix 64	AH1	D	453	458	Right-handed alpha
Helix 65	AH2	D	473	483	Right-handed alpha
Helix 66	AH3	D	504	514	Right-handed alpha
Helix 67	AH4	D	529	540	Right-handed alpha
Helix 68	AH5	D	574	581	Right-handed alpha
Helix 69	AH6	D	588	592	Right-handed 310
Helix 70	AH7	D	597	612	Right-handed alpha
Helix 71	AH8	D	614	636	Right-handed alpha
Helix 72	AH9	D	649	671	Right-handed alpha
Helix 73	AI1	D	674	703	Right-handed alpha
Helix 74	AI2	D	720	728	Right-handed alpha
Helix 75	AI3	D	733	741	Right-handed alpha
Helix 76	AI4	D	772	802	Right-handed alpha
Helix 77	AI5	D	867	876	Right-handed alpha
Helix 78	AI6	D	914	925	Right-handed alpha
Helix 79	AI7	D	1137	1147	Right-handed alpha
Helix 80	AI8	D	1216	1224	Right-handed alpha
Helix 81	AI9	D	1228	1245	Right-handed alpha
Helix 82	AJ1	D	1250	1261	Right-handed alpha
Helix 83	AJ2	D	1282	1294	Right-handed alpha
Helix 84	AJ3	D	1310	1315	Right-handed alpha
Helix 85	AJ4	D	1328	1339	Right-handed alpha
Helix 86	AJ5	D	1347	1354	Right-handed alpha
Helix 87	AJ6	D	1359	1373	Right-handed alpha
Helix 88	AJ7	E	7	13	Right-handed alpha
Helix 89	AJ8	E	17	30	Right-handed alpha
Helix 90	AJ9	E	45	57	Right-handed alpha
Helix 91	AK1	E	60	81	Right-handed alpha

There are 41 sheets in PDB entry 7YPB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	17	first strand
Strand 2	A	23	31	anti-parallel
Strand 3	A	199	207	anti-parallel
Strand 4	A	180	189	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	105	first strand
Strand 2	A	139	150	anti-parallel
Strand 3	A	52	61	anti-parallel
Strand 4	A	170	172	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	92	first strand
Strand 2	A	121	123	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	110	first strand
Strand 2	A	131	133	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	153	first strand
Strand 2	A	175	176	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	31	first strand
Strand 2	B	199	207	anti-parallel
Strand 3	B	180	188	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	104	first strand
Strand 2	B	140	150	anti-parallel
Strand 3	B	52	61	anti-parallel
Strand 4	B	171	172	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	91	first strand
Strand 2	B	122	123	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	14	first strand
Strand 2	C	1182	1183	parallel
Strand 3	C	700	701	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	66	75	anti-parallel
Strand 3	C	93	104	anti-parallel
Strand 4	C	118	128	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	137	first strand
Strand 2	C	142	145	anti-parallel
Strand 3	C	512	514	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	451	454	first strand
Strand 2	C	147	151	anti-parallel
Strand 3	C	530	531	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	160	first strand
Strand 2	C	171	177	anti-parallel
Strand 3	C	184	188	anti-parallel
Strand 4	C	194	197	anti-parallel
Strand 5	C	204	205	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	228	230	first strand
Strand 2	C	333	335	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	257	first strand
Strand 2	C	260	263	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	587	595	anti-parallel
Strand 3	C	598	606	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	587	595	anti-parallel
Strand 3	C	652	653	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	616	617	first strand
Strand 2	C	634	637	anti-parallel
Strand 3	C	642	645	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	716	717	first strand
Strand 2	C	782	785	anti-parallel
Strand 3	C	768	769	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	749	752	first strand
Strand 2	C	731	736	anti-parallel
Strand 3	C	722	727	anti-parallel
Strand 4	C	776	777	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	757	758	first strand
Strand 2	C	764	765	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	817	818	first strand
Strand 2	C	1096	1098	anti-parallel
Strand 3	C	798	804	parallel
Strand 4	C	1225	1234	anti-parallel
Strand 5	C	1066	1067	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	817	818	first strand
Strand 2	C	1096	1098	anti-parallel
Strand 3	C	798	804	parallel
Strand 4	C	1225	1234	anti-parallel
Strand 5	C	1209	1210	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	830	841	first strand
Strand 2	C	1046	1058	anti-parallel
Strand 3	C	927	935	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	882	884	first strand
Strand 2	C	918	919	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	887	888	first strand
Strand 2	C	914	915	anti-parallel

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There are 8 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1244	1246	first strand
Strand 2	D	350	356	anti-parallel
Strand 3	D	465	469	anti-parallel
Strand 4	D	421	425	anti-parallel
Strand 5	D	434	442	anti-parallel
Strand 6	D	365	369	parallel
Strand 7	D	447	448	anti-parallel
Strand 8	D	350	356	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1269	1270	first strand
Strand 2	D	345	346	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1335	1340	first strand
Strand 2	D	19	24	anti-parallel
Strand 3	D	1341	1343	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	111	first strand
Strand 2	D	239	243	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	145	first strand
Strand 2	D	159	160	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	547	556	first strand
Strand 2	D	564	573	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	706	708	first strand
Strand 2	D	713	715	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	820	822	first strand
Strand 2	D	880	882	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	949	951	first strand
Strand 2	D	1016	1019	anti-parallel
Strand 3	D	1002	1003	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	957	961	first strand
Strand 2	D	981	985	anti-parallel
Strand 3	D	991	995	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	966	967	first strand
Strand 2	D	973	974	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1077	1081	first strand
Strand 2	D	1033	1038	anti-parallel
Strand 3	D	1114	1115	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1046	1049	first strand
Strand 2	D	1058	1061	anti-parallel
Strand 3	D	1105	1107	anti-parallel
Strand 4	D	1122	1123	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1162	1165	first strand
Strand 2	D	1174	1178	anti-parallel
Strand 3	D	1188	1189	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1279	1281	first strand
Strand 2	D	1263	1268	anti-parallel
Strand 3	D	1301	1304	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YPB

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YPB