Analysis of interatomic Contacts of Structural Units in PDB entry:
7YPD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YPD entry

There are 2 chains in PDB entry 7YPD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 10TRP 261
A
 SER 10TRP 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 7YPD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
21 32Right-handed alpha
Helix 2
AA2
B
45 48Right-handed 310
Helix 3
AA3
B
49 60Right-handed alpha
Helix 4
AA4
B
71 86Right-handed alpha
Helix 5
AA5
B
109 121Right-handed alpha
Helix 6
AA6
B
121 137Right-handed alpha
Helix 7
AA7
B
148 152Right-handed 310
Helix 8
AA8
B
153 159Right-handed 310
Helix 9
AA9
B
164 190Right-handed alpha
Helix 10
AB1
B
208 215Right-handed alpha
Helix 11
AB2
B
227 242Right-handed alpha
Helix 12
AB3
B
243 248Right-handed alpha
Helix 13
AB4
A
23 33Right-handed alpha
Helix 14
AB5
A
45 48Right-handed 310
Helix 15
AB6
A
49 60Right-handed alpha
Helix 16
AB7
A
71 86Right-handed alpha
Helix 17
AB8
A
109 121Right-handed alpha
Helix 18
AB9
A
121 137Right-handed alpha
Helix 19
AC1
A
148 151Right-handed 310
Helix 20
AC2
A
152 157Right-handed alpha
Helix 21
AC3
A
164 190Right-handed alpha
Helix 22
AC4
A
201 205Right-handed 310
Helix 23
AC5
A
227 242Right-handed alpha
Helix 24
AC6
A
243 248Right-handed alpha
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There are 3 sheets in PDB entry 7YPD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 66first strand
Strand 2
B
37 43parallel
Strand 3
B
12 16parallel
Strand 4
B
91 94parallel
Strand 5
B
142 146parallel
Strand 6
B
192 197parallel
Strand 7
B
251 253parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
200 201first strand
Strand 2
B
225 226parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 66first strand
Strand 2
A
37 43parallel
Strand 3
A
12 17parallel
Strand 4
A
91 94parallel
Strand 5
A
142 146parallel
Strand 6
A
192 197parallel
Strand 7
A
251 253parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il