Analysis of interatomic Contacts of Structural Units in PDB entry:
7YPE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YPE entry

There is 1 chain in PDB entry 7YPE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0LEU 297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 7YPE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 57Right-handed alpha
Helix 2
AA2
A
91 93Right-handed 310
Helix 3
AA3
A
108 117Right-handed alpha
Helix 4
AA4
A
164 172Right-handed alpha
Helix 5
AA5
A
173 178Right-handed alpha
Helix 6
AA6
A
188 200Right-handed alpha
Helix 7
AA7
A
234 239Right-handed 310
Helix 8
AA8
A
256 266Right-handed alpha
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There are 3 sheets in PDB entry 7YPE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 98first strand
Strand 2
A
35 41anti-parallel
Strand 3
A
125 130anti-parallel
Strand 4
A
136 143anti-parallel
Strand 5
A
148 155anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 107first strand
Strand 2
A
61 66anti-parallel
Strand 3
A
70 76anti-parallel
Strand 4
A
82 89anti-parallel
Strand 5
A
290 296anti-parallel
Strand 6
A
281 287anti-parallel
Strand 7
A
270 275anti-parallel
Strand 8
A
182 187anti-parallel
Strand 9
A
241 242anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 232first strand
Strand 2
A
216 221anti-parallel
Strand 3
A
204 210anti-parallel
Strand 4
A
249 255anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il