Analysis of interatomic Contacts of Structural Units in PDB entry:
7YPF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YPF entry

There are 5 chains in PDB entry 7YPF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 0	LEU 297
B	SER 0	LEU 297
C	SER 0	LEU 297
D	SER 0	LEU 297
E	SER 0	GLU 112

There are 48 helices in PDB entry 7YPF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	57	Right-handed alpha
Helix 2	AA2	A	91	93	Right-handed 310
Helix 3	AA3	A	108	117	Right-handed alpha
Helix 4	AA4	A	163	172	Right-handed alpha
Helix 5	AA5	A	173	178	Right-handed alpha
Helix 6	AA6	A	188	200	Right-handed alpha
Helix 7	AA7	A	234	239	Right-handed 310
Helix 8	AA8	A	256	266	Right-handed alpha
Helix 9	AA9	B	44	57	Right-handed alpha
Helix 10	AB1	B	91	93	Right-handed 310
Helix 11	AB2	B	108	117	Right-handed alpha
Helix 12	AB3	B	164	172	Right-handed alpha
Helix 13	AB4	B	173	178	Right-handed alpha
Helix 14	AB5	B	188	200	Right-handed alpha
Helix 15	AB6	B	234	239	Right-handed 310
Helix 16	AB7	B	256	265	Right-handed alpha
Helix 17	AB8	C	44	57	Right-handed alpha
Helix 18	AB9	C	91	93	Right-handed 310
Helix 19	AC1	C	108	117	Right-handed alpha
Helix 20	AC2	C	164	172	Right-handed alpha
Helix 21	AC3	C	173	178	Right-handed alpha
Helix 22	AC4	C	188	200	Right-handed alpha
Helix 23	AC5	C	234	239	Right-handed 310
Helix 24	AC6	C	256	266	Right-handed alpha
Helix 25	AC7	D	44	57	Right-handed alpha
Helix 26	AC8	D	91	93	Right-handed 310
Helix 27	AC9	D	108	117	Right-handed alpha
Helix 28	AD1	D	164	171	Right-handed alpha
Helix 29	AD2	D	173	178	Right-handed alpha
Helix 30	AD3	D	188	200	Right-handed alpha
Helix 31	AD4	D	234	239	Right-handed 310
Helix 32	AD5	D	256	266	Right-handed alpha
Helix 33	AD6	E	44	57	Right-handed alpha
Helix 34	AD7	E	91	93	Right-handed 310
Helix 35	AD8	E	108	117	Right-handed alpha
Helix 36	AD9	E	163	172	Right-handed alpha
Helix 37	AE1	E	173	179	Right-handed alpha
Helix 38	AE2	E	188	200	Right-handed alpha
Helix 39	AE3	E	234	239	Right-handed 310
Helix 40	AE4	E	256	266	Right-handed alpha
Helix 41	AE5	F	44	57	Right-handed alpha
Helix 42	AE6	F	91	93	Right-handed 310
Helix 43	AE7	F	108	117	Right-handed alpha
Helix 44	AE8	F	163	172	Right-handed alpha
Helix 45	AE9	F	173	178	Right-handed alpha
Helix 46	AF1	F	188	200	Right-handed alpha
Helix 47	AF2	F	234	239	Right-handed 310
Helix 48	AF3	F	256	265	Right-handed alpha

There are 12 sheets in PDB entry 7YPF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	98	first strand
Strand 2	A	35	41	anti-parallel
Strand 3	A	125	130	anti-parallel
Strand 4	A	136	143	anti-parallel
Strand 5	A	148	155	anti-parallel
Strand 6	B	226	232	anti-parallel
Strand 7	B	216	221	anti-parallel
Strand 8	B	204	210	anti-parallel
Strand 9	B	249	255	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	107	first strand
Strand 2	A	61	66	anti-parallel
Strand 3	A	70	76	anti-parallel
Strand 4	A	82	89	anti-parallel
Strand 5	A	290	296	anti-parallel
Strand 6	A	281	287	anti-parallel
Strand 7	A	270	275	anti-parallel
Strand 8	A	182	187	anti-parallel
Strand 9	A	241	242	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	255	first strand
Strand 2	A	204	210	anti-parallel
Strand 3	A	216	221	anti-parallel
Strand 4	A	226	232	anti-parallel
Strand 5	C	148	155	anti-parallel
Strand 6	C	136	143	anti-parallel
Strand 7	C	125	130	anti-parallel
Strand 8	C	35	41	anti-parallel
Strand 9	C	95	98	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	98	first strand
Strand 2	B	35	41	anti-parallel
Strand 3	B	125	130	anti-parallel
Strand 4	B	136	143	anti-parallel
Strand 5	B	148	155	anti-parallel
Strand 6	C	226	232	anti-parallel
Strand 7	C	216	221	anti-parallel
Strand 8	C	204	210	anti-parallel
Strand 9	C	249	255	anti-parallel
Strand 10	F	1	2	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	107	first strand
Strand 2	B	61	66	anti-parallel
Strand 3	B	70	76	anti-parallel
Strand 4	B	82	89	anti-parallel
Strand 5	B	290	296	anti-parallel
Strand 6	B	281	287	anti-parallel
Strand 7	B	270	275	anti-parallel
Strand 8	B	182	187	anti-parallel
Strand 9	B	241	242	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	107	first strand
Strand 2	C	61	66	anti-parallel
Strand 3	C	70	76	anti-parallel
Strand 4	C	82	89	anti-parallel
Strand 5	C	290	296	anti-parallel
Strand 6	C	281	287	anti-parallel
Strand 7	C	270	275	anti-parallel
Strand 8	C	182	187	anti-parallel
Strand 9	C	241	242	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	98	first strand
Strand 2	D	35	41	anti-parallel
Strand 3	D	125	130	anti-parallel
Strand 4	D	136	143	anti-parallel
Strand 5	D	148	155	anti-parallel
Strand 6	E	226	232	anti-parallel
Strand 7	E	216	221	anti-parallel
Strand 8	E	204	210	anti-parallel
Strand 9	E	249	255	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	102	107	first strand
Strand 2	D	61	66	anti-parallel
Strand 3	D	70	76	anti-parallel
Strand 4	D	82	89	anti-parallel
Strand 5	D	290	296	anti-parallel
Strand 6	D	281	287	anti-parallel
Strand 7	D	270	275	anti-parallel
Strand 8	D	182	187	anti-parallel
Strand 9	D	241	242	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	249	255	first strand
Strand 2	D	204	210	anti-parallel
Strand 3	D	216	221	anti-parallel
Strand 4	D	226	232	anti-parallel
Strand 5	F	148	155	anti-parallel
Strand 6	F	136	143	anti-parallel
Strand 7	F	125	130	anti-parallel
Strand 8	F	35	41	anti-parallel
Strand 9	F	95	98	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	95	98	first strand
Strand 2	E	35	41	anti-parallel
Strand 3	E	125	130	anti-parallel
Strand 4	E	136	143	anti-parallel
Strand 5	E	148	155	anti-parallel
Strand 6	F	226	232	anti-parallel
Strand 7	F	216	221	anti-parallel
Strand 8	F	204	210	anti-parallel
Strand 9	F	249	255	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	102	107	first strand
Strand 2	E	61	66	anti-parallel
Strand 3	E	70	76	anti-parallel
Strand 4	E	82	89	anti-parallel
Strand 5	E	290	296	anti-parallel
Strand 6	E	281	287	anti-parallel
Strand 7	E	270	275	anti-parallel
Strand 8	E	182	187	anti-parallel
Strand 9	E	241	242	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	102	107	first strand
Strand 2	F	61	66	anti-parallel
Strand 3	F	70	76	anti-parallel
Strand 4	F	82	89	anti-parallel
Strand 5	F	290	296	anti-parallel
Strand 6	F	281	287	anti-parallel
Strand 7	F	270	275	anti-parallel
Strand 8	F	182	187	anti-parallel
Strand 9	F	241	242	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YPF

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YPF