Analysis of interatomic Contacts of Structural Units in PDB entry:
7YPH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YPH entry

There are 5 chains in PDB entry 7YPH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 2	PRO 774
B	ARG 2	PRO 774
C	ARG 2	PRO 774
D	ARG 2	PRO 774
E	ARG 2	PRO 774

There are142 helices in PDB entry 7YPH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	39	Right-handed alpha
Helix 2	AA2	A	117	137	Right-handed alpha
Helix 3	AA3	A	145	151	Right-handed 310
Helix 4	AA4	A	157	169	Right-handed alpha
Helix 5	AA5	A	172	182	Right-handed alpha
Helix 6	AA6	A	184	235	Right-handed alpha
Helix 7	AA7	A	238	243	Right-handed alpha
Helix 8	AA8	A	246	256	Right-handed alpha
Helix 9	AA9	A	259	272	Right-handed alpha
Helix 10	AB1	A	276	279	Right-handed 310
Helix 11	AB2	A	280	296	Right-handed alpha
Helix 12	AB3	A	307	319	Right-handed alpha
Helix 13	AB4	A	325	338	Right-handed alpha
Helix 14	AB5	A	361	371	Right-handed alpha
Helix 15	AB6	A	386	391	Right-handed alpha
Helix 16	AB7	A	403	412	Right-handed alpha
Helix 17	AB8	A	434	444	Right-handed alpha
Helix 18	AB9	A	494	505	Right-handed alpha
Helix 19	AC1	A	505	513	Right-handed alpha
Helix 20	AC2	A	523	535	Right-handed alpha
Helix 21	AC3	A	540	557	Right-handed alpha
Helix 22	AC4	A	630	647	Right-handed alpha
Helix 23	AC5	A	679	692	Right-handed alpha
Helix 24	AC6	A	718	728	Right-handed alpha
Helix 25	AC7	A	739	744	Right-handed alpha
Helix 26	AC8	A	747	753	Right-handed alpha
Helix 27	AC9	A	761	769	Right-handed alpha
Helix 28	AD1	B	30	39	Right-handed alpha
Helix 29	AD2	B	58	62	Right-handed 310
Helix 30	AD3	B	117	137	Right-handed alpha
Helix 31	AD4	B	146	150	Right-handed 310
Helix 32	AD5	B	157	169	Right-handed alpha
Helix 33	AD6	B	172	182	Right-handed alpha
Helix 34	AD7	B	184	237	Right-handed alpha
Helix 35	AD8	B	240	256	Right-handed alpha
Helix 36	AD9	B	259	273	Right-handed alpha
Helix 37	AE1	B	283	295	Right-handed alpha
Helix 38	AE2	B	308	318	Right-handed alpha
Helix 39	AE3	B	325	336	Right-handed alpha
Helix 40	AE4	B	360	373	Right-handed alpha
Helix 41	AE5	B	386	390	Right-handed 310
Helix 42	AE6	B	403	411	Right-handed alpha
Helix 43	AE7	B	424	427	Right-handed 310
Helix 44	AE8	B	434	444	Right-handed alpha
Helix 45	AE9	B	494	505	Right-handed alpha
Helix 46	AF1	B	506	515	Right-handed alpha
Helix 47	AF2	B	523	534	Right-handed alpha
Helix 48	AF3	B	540	561	Right-handed alpha
Helix 49	AF4	B	573	578	Right-handed alpha
Helix 50	AF5	B	630	647	Right-handed alpha
Helix 51	AF6	B	679	692	Right-handed alpha
Helix 52	AF7	B	717	728	Right-handed alpha
Helix 53	AF8	B	739	744	Right-handed alpha
Helix 54	AF9	B	761	768	Right-handed alpha
Helix 55	AG1	C	30	39	Right-handed alpha
Helix 56	AG2	C	119	137	Right-handed alpha
Helix 57	AG3	C	138	142	Right-handed 310
Helix 58	AG4	C	148	155	Right-handed alpha
Helix 59	AG5	C	157	168	Right-handed alpha
Helix 60	AG6	C	172	180	Right-handed alpha
Helix 61	AG7	C	184	242	Right-handed alpha
Helix 62	AG8	C	245	254	Right-handed alpha
Helix 63	AG9	C	259	272	Right-handed alpha
Helix 64	AH1	C	283	294	Right-handed alpha
Helix 65	AH2	C	308	318	Right-handed alpha
Helix 66	AH3	C	325	338	Right-handed alpha
Helix 67	AH4	C	361	372	Right-handed alpha
Helix 68	AH5	C	386	390	Right-handed 310
Helix 69	AH6	C	403	412	Right-handed alpha
Helix 70	AH7	C	434	444	Right-handed alpha
Helix 71	AH8	C	446	450	Right-handed 310
Helix 72	AH9	C	478	483	Right-handed alpha
Helix 73	AI1	C	494	505	Right-handed alpha
Helix 74	AI2	C	505	514	Right-handed alpha
Helix 75	AI3	C	524	534	Right-handed alpha
Helix 76	AI4	C	540	558	Right-handed alpha
Helix 77	AI5	C	570	574	Right-handed 310
Helix 78	AI6	C	630	647	Right-handed alpha
Helix 79	AI7	C	648	651	Right-handed 310
Helix 80	AI8	C	657	660	Right-handed 310
Helix 81	AI9	C	679	693	Right-handed alpha
Helix 82	AJ1	C	717	728	Right-handed alpha
Helix 83	AJ2	C	739	744	Right-handed alpha
Helix 84	AJ3	C	747	754	Right-handed alpha
Helix 85	AJ4	C	764	769	Right-handed alpha
Helix 86	AJ5	D	30	38	Right-handed alpha
Helix 87	AJ6	D	58	62	Right-handed 310
Helix 88	AJ7	D	117	137	Right-handed alpha
Helix 89	AJ8	D	148	153	Right-handed alpha
Helix 90	AJ9	D	157	169	Right-handed alpha
Helix 91	AK1	D	172	182	Right-handed alpha
Helix 92	AK2	D	184	238	Right-handed alpha
Helix 93	AK3	D	239	244	Right-handed alpha
Helix 94	AK4	D	244	256	Right-handed alpha
Helix 95	AK5	D	259	275	Right-handed alpha
Helix 96	AK6	D	281	296	Right-handed alpha
Helix 97	AK7	D	308	318	Right-handed alpha
Helix 98	AK8	D	323	336	Right-handed alpha
Helix 99	AK9	D	362	373	Right-handed alpha
Helix 100	AL1	D	386	390	Right-handed 310
Helix 101	AL2	D	403	412	Right-handed alpha
Helix 102	AL3	D	434	444	Right-handed alpha
Helix 103	AL4	D	478	482	Right-handed 310
Helix 104	AL5	D	494	506	Right-handed alpha
Helix 105	AL6	D	506	515	Right-handed alpha
Helix 106	AL7	D	523	533	Right-handed alpha
Helix 107	AL8	D	540	560	Right-handed alpha
Helix 108	AL9	D	573	578	Right-handed alpha
Helix 109	AM1	D	630	647	Right-handed alpha
Helix 110	AM2	D	648	652	Right-handed 310
Helix 111	AM3	D	656	661	Right-handed 310
Helix 112	AM4	D	679	693	Right-handed alpha
Helix 113	AM5	D	717	728	Right-handed alpha
Helix 114	AM6	D	740	745	Right-handed alpha
Helix 115	AM7	D	750	754	Right-handed 310
Helix 116	AM8	D	761	769	Right-handed alpha
Helix 117	AM9	E	30	39	Right-handed alpha
Helix 118	AN1	E	117	139	Right-handed alpha
Helix 119	AN2	E	150	154	Right-handed 310
Helix 120	AN3	E	157	168	Right-handed alpha
Helix 121	AN4	E	172	182	Right-handed alpha
Helix 122	AN5	E	185	236	Right-handed alpha
Helix 123	AN6	E	245	253	Right-handed alpha
Helix 124	AN7	E	259	273	Right-handed alpha
Helix 125	AN8	E	280	292	Right-handed alpha
Helix 126	AN9	E	309	315	Right-handed alpha
Helix 127	AO1	E	325	337	Right-handed alpha
Helix 128	AO2	E	361	372	Right-handed alpha
Helix 129	AO3	E	403	412	Right-handed alpha
Helix 130	AO4	E	435	443	Right-handed alpha
Helix 131	AO5	E	478	482	Right-handed 310
Helix 132	AO6	E	494	513	Right-handed alpha
Helix 133	AO7	E	523	533	Right-handed alpha
Helix 134	AO8	E	541	559	Right-handed alpha
Helix 135	AO9	E	573	578	Right-handed alpha
Helix 136	AP1	E	630	647	Right-handed alpha
Helix 137	AP2	E	656	661	Right-handed 310
Helix 138	AP3	E	679	693	Right-handed alpha
Helix 139	AP4	E	717	729	Right-handed alpha
Helix 140	AP5	E	739	745	Right-handed alpha
Helix 141	AP6	E	747	752	Right-handed alpha
Helix 142	AP7	E	761	769	Right-handed alpha

There are 37 sheets in PDB entry 7YPH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	49	first strand
Strand 2	A	62	71	anti-parallel
Strand 3	A	86	93	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	98	first strand
Strand 2	A	104	105	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	378	379	first strand
Strand 2	A	420	421	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	453	first strand
Strand 2	A	458	459	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	520	522	first strand
Strand 2	A	567	569	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	596	600	first strand
Strand 2	A	609	613	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	615	618	first strand
Strand 2	A	661	665	anti-parallel
Strand 3	A	623	625	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	733	736	first strand
Strand 2	A	756	759	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	5	first strand
Strand 2	B	104	109	anti-parallel
Strand 3	B	82	98	anti-parallel
Strand 4	B	20	25	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	5	first strand
Strand 2	B	104	109	anti-parallel
Strand 3	B	82	98	anti-parallel
Strand 4	B	66	76	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	378	380	first strand
Strand 2	B	420	422	parallel
Strand 3	B	468	470	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	451	452	first strand
Strand 2	B	459	460	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	623	624	first strand
Strand 2	B	663	664	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	705	706	first strand
Strand 2	B	712	713	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	732	736	first strand
Strand 2	B	755	759	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	45	first strand
Strand 2	C	68	71	anti-parallel
Strand 3	C	86	87	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	C	82	83	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	350	354	first strand
Strand 2	C	485	489	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	418	420	first strand
Strand 2	C	466	468	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	451	452	first strand
Strand 2	C	459	460	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	521	522	first strand
Strand 2	C	568	569	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	599	600	first strand
Strand 2	C	609	610	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	614	615	first strand
Strand 2	C	662	665	anti-parallel
Strand 3	C	622	625	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	700	702	first strand
Strand 2	C	732	736	parallel
Strand 3	C	755	759	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	5	first strand
Strand 2	D	105	106	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	9	first strand
Strand 2	D	44	47	parallel
Strand 3	D	65	75	anti-parallel
Strand 4	D	83	93	anti-parallel
Strand 5	D	20	22	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	469	470	first strand
Strand 2	D	352	354	parallel
Strand 3	D	488	489	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	379	380	first strand
Strand 2	D	421	422	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	596	597	first strand
Strand 2	D	612	615	anti-parallel
Strand 3	D	664	666	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	701	702	first strand
Strand 2	D	732	736	parallel
Strand 3	D	755	759	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	6	first strand
Strand 2	E	104	106	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	22	first strand
Strand 2	E	85	93	anti-parallel
Strand 3	E	65	73	anti-parallel
Strand 4	E	43	46	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	350	354	first strand
Strand 2	E	485	489	parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	376	377	first strand
Strand 2	E	418	421	parallel
Strand 3	E	466	469	parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	596	597	first strand
Strand 2	E	612	617	anti-parallel
Strand 3	E	662	666	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	701	702	first strand
Strand 2	E	732	734	parallel
Strand 3	E	755	756	parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	705	706	first strand
Strand 2	E	712	713	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YPH

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YPH