Analysis of interatomic Contacts of Structural Units in PDB entry:
7YPI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YPI entry

There are 6 chains in PDB entry 7YPI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 2	PRO 774
B	ARG 2	PRO 774
C	ARG 2	PRO 774
D	ARG 2	PRO 774
E	ARG 2	PRO 774
F	ARG 2	PRO 774

There are182 helices in PDB entry 7YPI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	36	Right-handed alpha
Helix 2	AA2	A	37	41	Right-handed 310
Helix 3	AA3	A	58	62	Right-handed 310
Helix 4	AA4	A	117	139	Right-handed alpha
Helix 5	AA5	A	149	153	Right-handed 310
Helix 6	AA6	A	157	170	Right-handed alpha
Helix 7	AA7	A	172	182	Right-handed alpha
Helix 8	AA8	A	184	235	Right-handed alpha
Helix 9	AA9	A	244	256	Right-handed alpha
Helix 10	AB1	A	259	272	Right-handed alpha
Helix 11	AB2	A	282	295	Right-handed alpha
Helix 12	AB3	A	307	315	Right-handed alpha
Helix 13	AB4	A	324	337	Right-handed alpha
Helix 14	AB5	A	360	373	Right-handed alpha
Helix 15	AB6	A	386	391	Right-handed alpha
Helix 16	AB7	A	403	412	Right-handed alpha
Helix 17	AB8	A	435	444	Right-handed alpha
Helix 18	AB9	A	444	449	Right-handed alpha
Helix 19	AC1	A	478	482	Right-handed 310
Helix 20	AC2	A	494	505	Right-handed alpha
Helix 21	AC3	A	505	513	Right-handed alpha
Helix 22	AC4	A	523	534	Right-handed alpha
Helix 23	AC5	A	540	561	Right-handed alpha
Helix 24	AC6	A	573	578	Right-handed alpha
Helix 25	AC7	A	630	647	Right-handed alpha
Helix 26	AC8	A	679	691	Right-handed alpha
Helix 27	AC9	A	717	728	Right-handed alpha
Helix 28	AD1	A	739	743	Right-handed 310
Helix 29	AD2	A	747	753	Right-handed alpha
Helix 30	AD3	A	761	769	Right-handed alpha
Helix 31	AD4	B	30	39	Right-handed alpha
Helix 32	AD5	B	118	137	Right-handed alpha
Helix 33	AD6	B	138	143	Right-handed 310
Helix 34	AD7	B	146	151	Right-handed alpha
Helix 35	AD8	B	157	169	Right-handed alpha
Helix 36	AD9	B	172	180	Right-handed alpha
Helix 37	AE1	B	184	233	Right-handed alpha
Helix 38	AE2	B	235	240	Right-handed alpha
Helix 39	AE3	B	246	256	Right-handed alpha
Helix 40	AE4	B	259	272	Right-handed alpha
Helix 41	AE5	B	280	296	Right-handed alpha
Helix 42	AE6	B	308	318	Right-handed alpha
Helix 43	AE7	B	319	323	Right-handed 310
Helix 44	AE8	B	325	339	Right-handed alpha
Helix 45	AE9	B	340	343	Right-handed 310
Helix 46	AF1	B	360	373	Right-handed alpha
Helix 47	AF2	B	386	390	Right-handed 310
Helix 48	AF3	B	403	411	Right-handed alpha
Helix 49	AF4	B	423	427	Right-handed 310
Helix 50	AF5	B	435	444	Right-handed alpha
Helix 51	AF6	B	447	451	Right-handed 310
Helix 52	AF7	B	473	477	Right-handed 310
Helix 53	AF8	B	478	482	Right-handed 310
Helix 54	AF9	B	494	505	Right-handed alpha
Helix 55	AG1	B	506	514	Right-handed alpha
Helix 56	AG2	B	523	535	Right-handed alpha
Helix 57	AG3	B	540	560	Right-handed alpha
Helix 58	AG4	B	573	577	Right-handed 310
Helix 59	AG5	B	630	646	Right-handed alpha
Helix 60	AG6	B	679	693	Right-handed alpha
Helix 61	AG7	B	717	728	Right-handed alpha
Helix 62	AG8	B	736	738	Right-handed 310
Helix 63	AG9	B	739	745	Right-handed alpha
Helix 64	AH1	B	761	770	Right-handed alpha
Helix 65	AH2	C	30	39	Right-handed alpha
Helix 66	AH3	C	58	62	Right-handed 310
Helix 67	AH4	C	117	138	Right-handed alpha
Helix 68	AH5	C	145	149	Right-handed 310
Helix 69	AH6	C	157	168	Right-handed alpha
Helix 70	AH7	C	172	182	Right-handed alpha
Helix 71	AH8	C	184	234	Right-handed alpha
Helix 72	AH9	C	235	237	Right-handed 310
Helix 73	AI1	C	244	249	Right-handed alpha
Helix 74	AI2	C	250	253	Right-handed 310
Helix 75	AI3	C	259	273	Right-handed alpha
Helix 76	AI4	C	283	296	Right-handed alpha
Helix 77	AI5	C	308	318	Right-handed alpha
Helix 78	AI6	C	324	337	Right-handed alpha
Helix 79	AI7	C	360	372	Right-handed alpha
Helix 80	AI8	C	403	412	Right-handed alpha
Helix 81	AI9	C	435	442	Right-handed alpha
Helix 82	AJ1	C	447	451	Right-handed 310
Helix 83	AJ2	C	478	483	Right-handed 310
Helix 84	AJ3	C	494	506	Right-handed alpha
Helix 85	AJ4	C	506	515	Right-handed alpha
Helix 86	AJ5	C	523	533	Right-handed alpha
Helix 87	AJ6	C	541	560	Right-handed alpha
Helix 88	AJ7	C	572	577	Right-handed alpha
Helix 89	AJ8	C	631	647	Right-handed alpha
Helix 90	AJ9	C	679	693	Right-handed alpha
Helix 91	AK1	C	717	728	Right-handed alpha
Helix 92	AK2	C	738	740	Right-handed 310
Helix 93	AK3	C	741	745	Right-handed 310
Helix 94	AK4	C	747	752	Right-handed alpha
Helix 95	AK5	C	761	770	Right-handed alpha
Helix 96	AK6	D	27	38	Right-handed alpha
Helix 97	AK7	D	117	139	Right-handed alpha
Helix 98	AK8	D	157	169	Right-handed alpha
Helix 99	AK9	D	172	182	Right-handed alpha
Helix 100	AL1	D	184	233	Right-handed alpha
Helix 101	AL2	D	240	245	Right-handed alpha
Helix 102	AL3	D	245	255	Right-handed alpha
Helix 103	AL4	D	259	272	Right-handed alpha
Helix 104	AL5	D	281	296	Right-handed alpha
Helix 105	AL6	D	307	318	Right-handed alpha
Helix 106	AL7	D	325	339	Right-handed alpha
Helix 107	AL8	D	360	372	Right-handed alpha
Helix 108	AL9	D	386	391	Right-handed alpha
Helix 109	AM1	D	403	412	Right-handed alpha
Helix 110	AM2	D	434	439	Right-handed alpha
Helix 111	AM3	D	446	450	Right-handed 310
Helix 112	AM4	D	494	506	Right-handed alpha
Helix 113	AM5	D	506	514	Right-handed alpha
Helix 114	AM6	D	524	535	Right-handed alpha
Helix 115	AM7	D	540	560	Right-handed alpha
Helix 116	AM8	D	573	577	Right-handed 310
Helix 117	AM9	D	586	590	Right-handed 310
Helix 118	AN1	D	630	645	Right-handed alpha
Helix 119	AN2	D	646	647	Right-handed 310
Helix 120	AN3	D	648	652	Right-handed 310
Helix 121	AN4	D	679	693	Right-handed alpha
Helix 122	AN5	D	717	728	Right-handed alpha
Helix 123	AN6	D	741	745	Right-handed 310
Helix 124	AN7	D	747	752	Right-handed alpha
Helix 125	AN8	D	761	767	Right-handed alpha
Helix 126	AN9	E	28	38	Right-handed alpha
Helix 127	AO1	E	117	139	Right-handed alpha
Helix 128	AO2	E	140	143	Right-handed 310
Helix 129	AO3	E	146	150	Right-handed 310
Helix 130	AO4	E	157	169	Right-handed alpha
Helix 131	AO5	E	172	181	Right-handed alpha
Helix 132	AO6	E	186	223	Right-handed alpha
Helix 133	AO7	E	224	234	Right-handed alpha
Helix 134	AO8	E	239	256	Right-handed alpha
Helix 135	AO9	E	259	273	Right-handed alpha
Helix 136	AP1	E	280	294	Right-handed alpha
Helix 137	AP2	E	308	319	Right-handed alpha
Helix 138	AP3	E	326	337	Right-handed alpha
Helix 139	AP4	E	360	372	Right-handed alpha
Helix 140	AP5	E	403	412	Right-handed alpha
Helix 141	AP6	E	434	444	Right-handed alpha
Helix 142	AP7	E	461	465	Right-handed 310
Helix 143	AP8	E	478	482	Right-handed 310
Helix 144	AP9	E	494	505	Right-handed alpha
Helix 145	AQ1	E	505	514	Right-handed alpha
Helix 146	AQ2	E	523	535	Right-handed alpha
Helix 147	AQ3	E	540	560	Right-handed alpha
Helix 148	AQ4	E	573	579	Right-handed alpha
Helix 149	AQ5	E	630	646	Right-handed alpha
Helix 150	AQ6	E	648	652	Right-handed 310
Helix 151	AQ7	E	679	693	Right-handed alpha
Helix 152	AQ8	E	717	729	Right-handed alpha
Helix 153	AQ9	E	738	740	Right-handed 310
Helix 154	AR1	E	761	767	Right-handed alpha
Helix 155	AR2	F	27	38	Right-handed alpha
Helix 156	AR3	F	117	139	Right-handed alpha
Helix 157	AR4	F	146	151	Right-handed alpha
Helix 158	AR5	F	157	169	Right-handed alpha
Helix 159	AR6	F	172	182	Right-handed alpha
Helix 160	AR7	F	186	238	Right-handed alpha
Helix 161	AR8	F	245	256	Right-handed alpha
Helix 162	AR9	F	259	272	Right-handed alpha
Helix 163	AS1	F	280	295	Right-handed alpha
Helix 164	AS2	F	308	316	Right-handed alpha
Helix 165	AS3	F	324	338	Right-handed alpha
Helix 166	AS4	F	361	372	Right-handed alpha
Helix 167	AS5	F	403	412	Right-handed alpha
Helix 168	AS6	F	435	443	Right-handed alpha
Helix 169	AS7	F	478	483	Right-handed alpha
Helix 170	AS8	F	494	505	Right-handed alpha
Helix 171	AS9	F	505	515	Right-handed alpha
Helix 172	AT1	F	523	534	Right-handed alpha
Helix 173	AT2	F	540	560	Right-handed alpha
Helix 174	AT3	F	573	579	Right-handed alpha
Helix 175	AT4	F	630	647	Right-handed alpha
Helix 176	AT5	F	648	651	Right-handed 310
Helix 177	AT6	F	679	693	Right-handed alpha
Helix 178	AT7	F	717	728	Right-handed alpha
Helix 179	AT8	F	738	740	Right-handed 310
Helix 180	AT9	F	741	746	Right-handed alpha
Helix 181	AU1	F	747	752	Right-handed alpha
Helix 182	AU2	F	761	766	Right-handed alpha

There are 39 sheets in PDB entry 7YPI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	10	first strand
Strand 2	A	43	48	parallel
Strand 3	A	65	74	anti-parallel
Strand 4	A	82	93	anti-parallel
Strand 5	A	20	25	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	376	378	first strand
Strand 2	A	418	420	parallel
Strand 3	A	466	471	parallel
Strand 4	A	352	354	parallel
Strand 5	A	487	489	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	520	522	first strand
Strand 2	A	567	569	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	597	603	first strand
Strand 2	A	606	618	anti-parallel
Strand 3	A	661	666	anti-parallel
Strand 4	A	623	625	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	700	702	first strand
Strand 2	A	732	736	parallel
Strand 3	A	755	759	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	705	706	first strand
Strand 2	A	712	713	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	22	first strand
Strand 2	B	85	87	anti-parallel
Strand 3	B	65	71	anti-parallel
Strand 4	B	91	93	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	22	first strand
Strand 2	B	85	87	anti-parallel
Strand 3	B	65	71	anti-parallel
Strand 4	B	43	46	anti-parallel
Strand 5	B	5	8	parallel
Strand 6	B	104	105	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	376	379	first strand
Strand 2	B	418	421	parallel
Strand 3	B	466	470	parallel
Strand 4	B	352	354	parallel
Strand 5	B	487	489	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	599	600	first strand
Strand 2	B	609	610	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	613	618	first strand
Strand 2	B	661	666	anti-parallel
Strand 3	B	625	626	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	732	733	first strand
Strand 2	B	755	756	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	25	first strand
Strand 2	C	81	93	anti-parallel
Strand 3	C	65	77	anti-parallel
Strand 4	C	43	47	anti-parallel
Strand 5	C	5	9	parallel
Strand 6	C	104	105	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	378	380	first strand
Strand 2	C	418	422	parallel
Strand 3	C	466	470	parallel
Strand 4	C	352	354	parallel
Strand 5	C	487	489	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	520	522	first strand
Strand 2	C	567	569	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	593	594	first strand
Strand 2	C	695	696	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	601	603	first strand
Strand 2	C	606	608	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	613	615	first strand
Strand 2	C	664	666	anti-parallel
Strand 3	C	624	626	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	700	702	first strand
Strand 2	C	732	736	parallel
Strand 3	C	755	759	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	6	first strand
Strand 2	D	104	106	anti-parallel
Strand 3	D	97	98	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	25	first strand
Strand 2	D	82	87	anti-parallel
Strand 3	D	66	71	anti-parallel
Strand 4	D	43	46	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	25	first strand
Strand 2	D	82	87	anti-parallel
Strand 3	D	66	71	anti-parallel
Strand 4	D	91	92	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	376	377	first strand
Strand 2	D	418	421	parallel
Strand 3	D	466	471	parallel
Strand 4	D	351	354	parallel
Strand 5	D	487	489	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	520	522	first strand
Strand 2	D	567	569	parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	623	625	first strand
Strand 2	D	661	666	parallel
Strand 3	D	612	618	anti-parallel
Strand 4	D	596	599	anti-parallel
Strand 5	D	701	702	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	705	707	first strand
Strand 2	D	711	713	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	732	736	first strand
Strand 2	D	755	759	parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	21	23	first strand
Strand 2	E	84	93	anti-parallel
Strand 3	E	65	73	anti-parallel
Strand 4	E	43	46	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	376	380	first strand
Strand 2	E	418	422	parallel
Strand 3	E	466	471	parallel
Strand 4	E	352	354	parallel
Strand 5	E	487	489	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	520	522	first strand
Strand 2	E	567	569	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	613	618	first strand
Strand 2	E	661	666	anti-parallel
Strand 3	E	623	625	parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	700	702	first strand
Strand 2	E	732	736	parallel
Strand 3	E	755	759	parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	21	23	first strand
Strand 2	F	84	93	anti-parallel
Strand 3	F	62	74	anti-parallel
Strand 4	F	43	49	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	376	380	first strand
Strand 2	F	418	422	parallel
Strand 3	F	466	471	parallel
Strand 4	F	352	354	parallel
Strand 5	F	487	488	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	520	522	first strand
Strand 2	F	567	569	parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	598	600	first strand
Strand 2	F	609	611	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	613	615	first strand
Strand 2	F	663	666	anti-parallel
Strand 3	F	623	624	parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	705	706	first strand
Strand 2	F	712	713	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	732	736	first strand
Strand 2	F	755	759	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YPI

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YPI