Analysis of interatomic Contacts of Structural Units in PDB entry:
7YPJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YPJ entry

There are 5 chains in PDB entry 7YPJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 2	PRO 774
B	ARG 2	PRO 774
C	ARG 2	PRO 774
D	ARG 2	PRO 774
E	ARG 2	PRO 774

There are151 helices in PDB entry 7YPJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	40	Right-handed alpha
Helix 2	AA2	A	117	139	Right-handed alpha
Helix 3	AA3	A	145	153	Right-handed 310
Helix 4	AA4	A	157	169	Right-handed alpha
Helix 5	AA5	A	172	182	Right-handed alpha
Helix 6	AA6	A	184	235	Right-handed alpha
Helix 7	AA7	A	237	243	Right-handed alpha
Helix 8	AA8	A	245	256	Right-handed alpha
Helix 9	AA9	A	259	271	Right-handed alpha
Helix 10	AB1	A	280	296	Right-handed alpha
Helix 11	AB2	A	308	319	Right-handed alpha
Helix 12	AB3	A	325	337	Right-handed alpha
Helix 13	AB4	A	360	373	Right-handed alpha
Helix 14	AB5	A	386	391	Right-handed alpha
Helix 15	AB6	A	403	411	Right-handed alpha
Helix 16	AB7	A	434	444	Right-handed alpha
Helix 17	AB8	A	444	449	Right-handed alpha
Helix 18	AB9	A	478	483	Right-handed alpha
Helix 19	AC1	A	494	505	Right-handed alpha
Helix 20	AC2	A	505	513	Right-handed alpha
Helix 21	AC3	A	523	534	Right-handed alpha
Helix 22	AC4	A	540	559	Right-handed alpha
Helix 23	AC5	A	573	578	Right-handed alpha
Helix 24	AC6	A	630	647	Right-handed alpha
Helix 25	AC7	A	656	660	Right-handed alpha
Helix 26	AC8	A	679	692	Right-handed alpha
Helix 27	AC9	A	717	729	Right-handed alpha
Helix 28	AD1	A	740	746	Right-handed 310
Helix 29	AD2	A	747	754	Right-handed alpha
Helix 30	AD3	A	761	770	Right-handed alpha
Helix 31	AD4	B	30	38	Right-handed alpha
Helix 32	AD5	B	58	62	Right-handed 310
Helix 33	AD6	B	117	137	Right-handed alpha
Helix 34	AD7	B	145	153	Right-handed 310
Helix 35	AD8	B	157	166	Right-handed alpha
Helix 36	AD9	B	172	181	Right-handed alpha
Helix 37	AE1	B	186	237	Right-handed alpha
Helix 38	AE2	B	239	256	Right-handed alpha
Helix 39	AE3	B	259	272	Right-handed alpha
Helix 40	AE4	B	283	296	Right-handed alpha
Helix 41	AE5	B	310	320	Right-handed alpha
Helix 42	AE6	B	324	338	Right-handed alpha
Helix 43	AE7	B	360	373	Right-handed alpha
Helix 44	AE8	B	386	391	Right-handed alpha
Helix 45	AE9	B	403	411	Right-handed alpha
Helix 46	AF1	B	435	444	Right-handed alpha
Helix 47	AF2	B	444	450	Right-handed alpha
Helix 48	AF3	B	478	483	Right-handed alpha
Helix 49	AF4	B	494	506	Right-handed alpha
Helix 50	AF5	B	506	514	Right-handed alpha
Helix 51	AF6	B	523	534	Right-handed alpha
Helix 52	AF7	B	540	560	Right-handed alpha
Helix 53	AF8	B	573	578	Right-handed alpha
Helix 54	AF9	B	630	646	Right-handed alpha
Helix 55	AG1	B	648	652	Right-handed 310
Helix 56	AG2	B	679	693	Right-handed alpha
Helix 57	AG3	B	717	727	Right-handed alpha
Helix 58	AG4	B	736	738	Right-handed 310
Helix 59	AG5	B	739	744	Right-handed alpha
Helix 60	AG6	B	761	765	Right-handed 310
Helix 61	AG7	C	29	39	Right-handed alpha
Helix 62	AG8	C	118	139	Right-handed alpha
Helix 63	AG9	C	140	143	Right-handed 310
Helix 64	AH1	C	146	154	Right-handed alpha
Helix 65	AH2	C	157	169	Right-handed alpha
Helix 66	AH3	C	172	182	Right-handed alpha
Helix 67	AH4	C	184	238	Right-handed alpha
Helix 68	AH5	C	239	256	Right-handed alpha
Helix 69	AH6	C	259	274	Right-handed alpha
Helix 70	AH7	C	283	295	Right-handed alpha
Helix 71	AH8	C	308	319	Right-handed alpha
Helix 72	AH9	C	324	338	Right-handed alpha
Helix 73	AI1	C	361	372	Right-handed alpha
Helix 74	AI2	C	403	412	Right-handed alpha
Helix 75	AI3	C	435	444	Right-handed alpha
Helix 76	AI4	C	446	451	Right-handed 310
Helix 77	AI5	C	495	506	Right-handed alpha
Helix 78	AI6	C	506	515	Right-handed alpha
Helix 79	AI7	C	523	534	Right-handed alpha
Helix 80	AI8	C	540	560	Right-handed alpha
Helix 81	AI9	C	573	578	Right-handed alpha
Helix 82	AJ1	C	630	647	Right-handed alpha
Helix 83	AJ2	C	679	692	Right-handed alpha
Helix 84	AJ3	C	717	727	Right-handed alpha
Helix 85	AJ4	C	739	744	Right-handed alpha
Helix 86	AJ5	C	747	751	Right-handed 310
Helix 87	AJ6	C	761	770	Right-handed alpha
Helix 88	AJ7	D	30	40	Right-handed alpha
Helix 89	AJ8	D	117	137	Right-handed alpha
Helix 90	AJ9	D	151	155	Right-handed 310
Helix 91	AK1	D	157	169	Right-handed alpha
Helix 92	AK2	D	172	181	Right-handed alpha
Helix 93	AK3	D	184	238	Right-handed alpha
Helix 94	AK4	D	238	244	Right-handed alpha
Helix 95	AK5	D	247	256	Right-handed alpha
Helix 96	AK6	D	259	273	Right-handed alpha
Helix 97	AK7	D	283	295	Right-handed alpha
Helix 98	AK8	D	307	318	Right-handed alpha
Helix 99	AK9	D	325	337	Right-handed alpha
Helix 100	AL1	D	360	373	Right-handed alpha
Helix 101	AL2	D	386	391	Right-handed alpha
Helix 102	AL3	D	403	412	Right-handed alpha
Helix 103	AL4	D	435	444	Right-handed alpha
Helix 104	AL5	D	446	451	Right-handed 310
Helix 105	AL6	D	478	483	Right-handed alpha
Helix 106	AL7	D	494	506	Right-handed alpha
Helix 107	AL8	D	506	514	Right-handed alpha
Helix 108	AL9	D	523	534	Right-handed alpha
Helix 109	AM1	D	540	560	Right-handed alpha
Helix 110	AM2	D	573	578	Right-handed alpha
Helix 111	AM3	D	586	590	Right-handed 310
Helix 112	AM4	D	633	646	Right-handed alpha
Helix 113	AM5	D	647	651	Right-handed 310
Helix 114	AM6	D	656	660	Right-handed alpha
Helix 115	AM7	D	679	692	Right-handed alpha
Helix 116	AM8	D	717	727	Right-handed alpha
Helix 117	AM9	D	739	744	Right-handed 310
Helix 118	AN1	D	747	752	Right-handed alpha
Helix 119	AN2	D	765	770	Right-handed alpha
Helix 120	AN3	E	27	39	Right-handed alpha
Helix 121	AN4	E	58	62	Right-handed 310
Helix 122	AN5	E	117	139	Right-handed alpha
Helix 123	AN6	E	157	169	Right-handed alpha
Helix 124	AN7	E	172	182	Right-handed alpha
Helix 125	AN8	E	184	235	Right-handed alpha
Helix 126	AN9	E	237	245	Right-handed alpha
Helix 127	AO1	E	246	257	Right-handed alpha
Helix 128	AO2	E	259	274	Right-handed alpha
Helix 129	AO3	E	281	288	Right-handed alpha
Helix 130	AO4	E	290	295	Right-handed alpha
Helix 131	AO5	E	307	316	Right-handed alpha
Helix 132	AO6	E	324	338	Right-handed alpha
Helix 133	AO7	E	360	372	Right-handed alpha
Helix 134	AO8	E	403	412	Right-handed alpha
Helix 135	AO9	E	423	427	Right-handed 310
Helix 136	AP1	E	435	444	Right-handed alpha
Helix 137	AP2	E	444	449	Right-handed alpha
Helix 138	AP3	E	478	482	Right-handed 310
Helix 139	AP4	E	494	514	Right-handed alpha
Helix 140	AP5	E	523	534	Right-handed alpha
Helix 141	AP6	E	543	561	Right-handed alpha
Helix 142	AP7	E	570	572	Right-handed 310
Helix 143	AP8	E	573	578	Right-handed alpha
Helix 144	AP9	E	584	589	Right-handed 310
Helix 145	AQ1	E	630	651	Right-handed alpha
Helix 146	AQ2	E	654	659	Right-handed 310
Helix 147	AQ3	E	680	693	Right-handed alpha
Helix 148	AQ4	E	717	729	Right-handed alpha
Helix 149	AQ5	E	736	738	Right-handed 310
Helix 150	AQ6	E	739	744	Right-handed alpha
Helix 151	AQ7	E	761	770	Right-handed alpha

There are 36 sheets in PDB entry 7YPJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	23	first strand
Strand 2	A	84	98	anti-parallel
Strand 3	A	65	74	anti-parallel
Strand 4	A	43	46	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	23	first strand
Strand 2	A	84	98	anti-parallel
Strand 3	A	104	107	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	353	first strand
Strand 2	A	466	470	parallel
Strand 3	A	418	422	parallel
Strand 4	A	378	380	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	520	522	first strand
Strand 2	A	567	569	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	596	601	first strand
Strand 2	A	608	618	anti-parallel
Strand 3	A	661	666	anti-parallel
Strand 4	A	623	625	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	701	702	first strand
Strand 2	A	732	736	parallel
Strand 3	A	755	759	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	25	first strand
Strand 2	B	82	92	anti-parallel
Strand 3	B	66	76	anti-parallel
Strand 4	B	43	45	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	376	379	first strand
Strand 2	B	418	421	parallel
Strand 3	B	467	469	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	598	603	first strand
Strand 2	B	606	611	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	613	614	first strand
Strand 2	B	663	666	anti-parallel
Strand 3	B	623	626	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	700	702	first strand
Strand 2	B	732	734	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	705	706	first strand
Strand 2	B	712	713	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	6	first strand
Strand 2	C	104	105	anti-parallel
Strand 3	C	97	98	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	23	first strand
Strand 2	C	82	91	anti-parallel
Strand 3	C	67	71	anti-parallel
Strand 4	C	44	45	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	23	first strand
Strand 2	C	82	91	anti-parallel
Strand 3	C	77	78	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	353	354	first strand
Strand 2	C	488	489	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	380	first strand
Strand 2	C	418	422	parallel
Strand 3	C	468	469	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	520	522	first strand
Strand 2	C	567	569	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	592	593	first strand
Strand 2	C	696	697	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	624	625	first strand
Strand 2	C	664	665	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	705	707	first strand
Strand 2	C	711	713	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	103	106	anti-parallel
Strand 3	D	97	98	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	25	first strand
Strand 2	D	82	93	anti-parallel
Strand 3	D	65	76	anti-parallel
Strand 4	D	43	47	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	25	first strand
Strand 2	D	82	93	anti-parallel
Strand 3	D	110	111	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	350	352	first strand
Strand 2	D	485	487	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	377	378	first strand
Strand 2	D	418	420	parallel
Strand 3	D	466	468	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	520	522	first strand
Strand 2	D	567	569	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	617	618	first strand
Strand 2	D	661	666	anti-parallel
Strand 3	D	622	624	parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	617	618	first strand
Strand 2	D	661	666	anti-parallel
Strand 3	D	608	614	anti-parallel
Strand 4	D	596	601	anti-parallel
Strand 5	D	701	702	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	734	736	first strand
Strand 2	D	757	759	parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	5	first strand
Strand 2	E	104	110	anti-parallel
Strand 3	E	82	98	anti-parallel
Strand 4	E	20	25	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	5	first strand
Strand 2	E	104	110	anti-parallel
Strand 3	E	82	98	anti-parallel
Strand 4	E	65	73	anti-parallel
Strand 5	E	43	46	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	352	353	first strand
Strand 2	E	487	488	parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	376	378	first strand
Strand 2	E	418	421	parallel
Strand 3	E	466	469	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	520	522	first strand
Strand 2	E	567	569	parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	732	733	first strand
Strand 2	E	755	756	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YPJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YPJ