Analysis of interatomic Contacts of Structural Units in PDB entry:
7YPM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YPM entry

There are 4 chains in PDB entry 7YPM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 8	LEU 461
B	HIS 8	LEU 461
C	HIS 8	LEU 461
D	HIS 8	LEU 461

There are 81 helices in PDB entry 7YPM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	21	Right-handed alpha
Helix 2	AA2	A	27	34	Right-handed alpha
Helix 3	AA3	A	60	65	Right-handed alpha
Helix 4	AA4	A	72	86	Right-handed alpha
Helix 5	AA5	A	97	112	Right-handed alpha
Helix 6	AA6	A	123	142	Right-handed alpha
Helix 7	AA7	A	161	168	Right-handed alpha
Helix 8	AA8	A	170	176	Right-handed alpha
Helix 9	AA9	A	191	196	Right-handed alpha
Helix 10	AB1	A	200	220	Right-handed alpha
Helix 11	AB2	A	244	257	Right-handed alpha
Helix 12	AB3	A	276	281	Right-handed alpha
Helix 13	AB4	A	291	295	Right-handed 310
Helix 14	AB5	A	308	318	Right-handed alpha
Helix 15	AB6	A	330	348	Right-handed alpha
Helix 16	AB7	A	348	356	Right-handed alpha
Helix 17	AB8	A	356	367	Right-handed alpha
Helix 18	AB9	A	397	401	Right-handed 310
Helix 19	AC1	A	404	416	Right-handed alpha
Helix 20	AC2	A	436	460	Right-handed alpha
Helix 21	AC3	B	9	21	Right-handed alpha
Helix 22	AC4	B	28	34	Right-handed alpha
Helix 23	AC5	B	60	65	Right-handed alpha
Helix 24	AC6	B	72	86	Right-handed alpha
Helix 25	AC7	B	97	112	Right-handed alpha
Helix 26	AC8	B	123	142	Right-handed alpha
Helix 27	AC9	B	161	168	Right-handed alpha
Helix 28	AD1	B	170	176	Right-handed alpha
Helix 29	AD2	B	191	196	Right-handed alpha
Helix 30	AD3	B	200	220	Right-handed alpha
Helix 31	AD4	B	244	257	Right-handed alpha
Helix 32	AD5	B	276	281	Right-handed alpha
Helix 33	AD6	B	291	295	Right-handed 310
Helix 34	AD7	B	308	318	Right-handed alpha
Helix 35	AD8	B	330	348	Right-handed alpha
Helix 36	AD9	B	348	356	Right-handed alpha
Helix 37	AE1	B	356	367	Right-handed alpha
Helix 38	AE2	B	397	401	Right-handed 310
Helix 39	AE3	B	404	416	Right-handed alpha
Helix 40	AE4	B	436	460	Right-handed alpha
Helix 41	AE5	C	9	21	Right-handed alpha
Helix 42	AE6	C	27	34	Right-handed alpha
Helix 43	AE7	C	60	65	Right-handed alpha
Helix 44	AE8	C	72	86	Right-handed alpha
Helix 45	AE9	C	97	112	Right-handed alpha
Helix 46	AF1	C	123	142	Right-handed alpha
Helix 47	AF2	C	161	168	Right-handed alpha
Helix 48	AF3	C	170	176	Right-handed alpha
Helix 49	AF4	C	191	196	Right-handed alpha
Helix 50	AF5	C	200	220	Right-handed alpha
Helix 51	AF6	C	244	257	Right-handed alpha
Helix 52	AF7	C	276	281	Right-handed alpha
Helix 53	AF8	C	291	295	Right-handed 310
Helix 54	AF9	C	308	318	Right-handed alpha
Helix 55	AG1	C	330	347	Right-handed alpha
Helix 56	AG2	C	348	356	Right-handed alpha
Helix 57	AG3	C	356	367	Right-handed alpha
Helix 58	AG4	C	368	371	Right-handed 310
Helix 59	AG5	C	397	401	Right-handed 310
Helix 60	AG6	C	404	416	Right-handed alpha
Helix 61	AG7	C	436	460	Right-handed alpha
Helix 62	AG8	D	9	21	Right-handed alpha
Helix 63	AG9	D	27	34	Right-handed alpha
Helix 64	AH1	D	60	65	Right-handed alpha
Helix 65	AH2	D	72	86	Right-handed alpha
Helix 66	AH3	D	97	112	Right-handed alpha
Helix 67	AH4	D	123	142	Right-handed alpha
Helix 68	AH5	D	161	168	Right-handed alpha
Helix 69	AH6	D	170	176	Right-handed alpha
Helix 70	AH7	D	191	196	Right-handed alpha
Helix 71	AH8	D	200	220	Right-handed alpha
Helix 72	AH9	D	244	257	Right-handed alpha
Helix 73	AI1	D	276	281	Right-handed alpha
Helix 74	AI2	D	291	295	Right-handed 310
Helix 75	AI3	D	308	318	Right-handed alpha
Helix 76	AI4	D	330	348	Right-handed alpha
Helix 77	AI5	D	348	356	Right-handed alpha
Helix 78	AI6	D	356	367	Right-handed alpha
Helix 79	AI7	D	397	401	Right-handed 310
Helix 80	AI8	D	404	416	Right-handed alpha
Helix 81	AI9	D	436	460	Right-handed alpha

There are 13 sheets in PDB entry 7YPM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	44	first strand
Strand 2	A	47	50	anti-parallel
Strand 3	A	55	58	anti-parallel
Strand 4	A	418	419	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	121	first strand
Strand 2	A	302	307	anti-parallel
Strand 3	A	287	290	anti-parallel
Strand 4	A	259	263	parallel
Strand 5	A	224	229	parallel
Strand 6	A	149	153	parallel
Strand 7	A	184	187	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	380	first strand
Strand 2	A	383	388	anti-parallel
Strand 3	A	426	429	anti-parallel
Strand 4	A	421	423	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	27	first strand
Strand 2	D	320	321	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	419	first strand
Strand 2	B	55	58	parallel
Strand 3	B	47	50	anti-parallel
Strand 4	B	38	44	anti-parallel
Strand 5	D	95	96	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	96	first strand
Strand 2	D	38	44	parallel
Strand 3	D	47	50	anti-parallel
Strand 4	D	55	58	anti-parallel
Strand 5	D	418	419	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	121	first strand
Strand 2	B	302	307	anti-parallel
Strand 3	B	287	290	anti-parallel
Strand 4	B	259	263	parallel
Strand 5	B	224	229	parallel
Strand 6	B	149	153	parallel
Strand 7	B	184	187	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	374	380	first strand
Strand 2	B	383	388	anti-parallel
Strand 3	B	426	429	anti-parallel
Strand 4	B	421	423	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	44	first strand
Strand 2	C	47	50	anti-parallel
Strand 3	C	55	58	anti-parallel
Strand 4	C	418	419	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	121	first strand
Strand 2	C	302	307	anti-parallel
Strand 3	C	287	290	anti-parallel
Strand 4	C	259	263	parallel
Strand 5	C	224	229	parallel
Strand 6	C	149	153	parallel
Strand 7	C	184	187	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	374	380	first strand
Strand 2	C	383	388	anti-parallel
Strand 3	C	426	429	anti-parallel
Strand 4	C	421	423	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	121	first strand
Strand 2	D	302	307	anti-parallel
Strand 3	D	287	290	anti-parallel
Strand 4	D	259	263	parallel
Strand 5	D	224	229	parallel
Strand 6	D	149	153	parallel
Strand 7	D	184	187	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	374	380	first strand
Strand 2	D	383	388	anti-parallel
Strand 3	D	426	429	anti-parallel
Strand 4	D	421	423	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YPM

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YPM