Analysis of interatomic Contacts of Structural Units in PDB entry:
7YPP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YPP entry

There are 6 chains in PDB entry 7YPP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 30VAL 194
C
 VAL 30VAL 194
D
 VAL 30VAL 194
E
 LEU 33VAL 194
B
 VAL 30VAL 194
F
 PHE 34VAL 194
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 7YPP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 35Right-handed 310
Helix 2
AA2
A
47 51Right-handed 310
Helix 3
AA3
A
175 180Right-handed alpha
Helix 4
AA4
C
31 35Right-handed 310
Helix 5
AA5
C
47 51Right-handed 310
Helix 6
AA6
C
175 180Right-handed alpha
Helix 7
AA7
D
31 35Right-handed 310
Helix 8
AA8
D
47 51Right-handed 310
Helix 9
AA9
D
175 180Right-handed alpha
Helix 10
AB1
E
47 51Right-handed 310
Helix 11
AB2
E
175 180Right-handed alpha
Helix 12
AB3
B
31 35Right-handed 310
Helix 13
AB4
B
47 51Right-handed 310
Helix 14
AB5
B
175 180Right-handed alpha
Helix 15
AB6
F
47 51Right-handed 310
Helix 16
AB7
F
175 180Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 7YPP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 45first strand
Strand 2
A
54 61anti-parallel
Strand 3
A
68 75anti-parallel
Strand 4
A
136 142anti-parallel
Strand 5
A
124 130anti-parallel
Strand 6
A
80 86anti-parallel
Strand 7
A
158 162anti-parallel
Strand 8
A
185 193anti-parallel
Strand 9
A
38 45anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
124 130first strand
Strand 2
C
80 86anti-parallel
Strand 3
C
158 162anti-parallel
Strand 4
C
185 193anti-parallel
Strand 5
C
38 45anti-parallel
Strand 6
C
54 61anti-parallel
Strand 7
C
68 75anti-parallel
Strand 8
C
136 142anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
124 130first strand
Strand 2
D
80 86anti-parallel
Strand 3
D
158 162anti-parallel
Strand 4
D
185 193anti-parallel
Strand 5
D
38 45anti-parallel
Strand 6
D
54 61anti-parallel
Strand 7
D
68 75anti-parallel
Strand 8
D
136 142anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
38 45first strand
Strand 2
E
54 61anti-parallel
Strand 3
E
68 75anti-parallel
Strand 4
E
136 142anti-parallel
Strand 5
E
124 130anti-parallel
Strand 6
E
80 86anti-parallel
Strand 7
E
158 162anti-parallel
Strand 8
E
185 193anti-parallel
Strand 9
E
38 45anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 130first strand
Strand 2
B
80 86anti-parallel
Strand 3
B
158 162anti-parallel
Strand 4
B
185 193anti-parallel
Strand 5
B
38 45anti-parallel
Strand 6
B
54 61anti-parallel
Strand 7
B
68 75anti-parallel
Strand 8
B
136 142anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
38 45first strand
Strand 2
F
54 61anti-parallel
Strand 3
F
68 75anti-parallel
Strand 4
F
136 142anti-parallel
Strand 5
F
124 130anti-parallel
Strand 6
F
80 86anti-parallel
Strand 7
F
158 162anti-parallel
Strand 8
F
185 193anti-parallel
Strand 9
F
38 45anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il