Analysis of interatomic Contacts of Structural Units in PDB entry:
7YPW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YPW entry

There are 2 chains in PDB entry 7YPW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 20GLU 407
R
 U 1 U 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 7YPW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 27Right-handed 310
Helix 2
AA2
A
48 63Right-handed alpha
Helix 3
AA3
A
68 83Right-handed alpha
Helix 4
AA4
A
86 91Right-handed alpha
Helix 5
AA5
A
93 100Right-handed alpha
Helix 6
AA6
A
116 121Right-handed 310
Helix 7
AA7
A
124 137Right-handed alpha
Helix 8
AA8
A
146 156Right-handed alpha
Helix 9
AA9
A
164 182Right-handed alpha
Helix 10
AB1
A
188 192Right-handed 310
Helix 11
AB2
A
193 207Right-handed alpha
Helix 12
AB3
A
208 221Right-handed alpha
Helix 13
AB4
A
226 238Right-handed alpha
Helix 14
AB5
A
244 254Right-handed alpha
Helix 15
AB6
A
265 269Right-handed 310
Helix 16
AB7
A
270 288Right-handed alpha
Helix 17
AB8
A
293 295Right-handed 310
Helix 18
AB9
A
296 301Right-handed alpha
Helix 19
AC1
A
302 306Right-handed 310
Helix 20
AC2
A
313 328Right-handed alpha
Helix 21
AC3
A
330 334Right-handed 310
Helix 22
AC4
A
340 366Right-handed alpha
Helix 23
AC5
A
369 406Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 7YPW.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 45first strand
Strand 2
A
104 110parallel
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