Analysis of interatomic Contacts of Structural Units in PDB entry:
7YQ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YQ4 entry

There are 5 chains in PDB entry 7YQ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 HIS 1ASP 591
B
 ASN 3THR 27
A
 GLY 1ASN 21
F
 PRO 4PRO 718
G
 C 1 C 1
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 7YQ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
17 24Right-handed 310
Helix 2
AA2
E
42 46Right-handed 310
Helix 3
AA3
E
71 75Right-handed 310
Helix 4
AA4
E
132 137Right-handed alpha
Helix 5
AA5
E
255 267Right-handed alpha
Helix 6
AA6
E
314 318Right-handed 310
Helix 7
AA7
E
354 359Right-handed alpha
Helix 8
AA8
E
435 446Right-handed alpha
Helix 9
AA9
E
525 529Right-handed 310
Helix 10
AB1
B
9 18Right-handed alpha
Helix 11
AB2
A
2 6Right-handed alpha
Helix 12
AB3
F
17 24Right-handed 310
Helix 13
AB4
F
42 46Right-handed 310
Helix 14
AB5
F
139 143Right-handed 310
Helix 15
AB6
F
148 152Right-handed 310
Helix 16
AB7
F
256 266Right-handed alpha
Helix 17
AB8
F
323 328Right-handed alpha
Helix 18
AB9
F
329 331Right-handed 310
Helix 19
AC1
F
352 358Right-handed alpha
Helix 20
AC2
F
688 714Right-handed alpha
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There are 21 sheets in PDB entry 7YQ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
6 8first strand
Strand 2
E
26 29parallel
Strand 3
E
56 57parallel
Strand 4
E
81 82parallel
Strand 5
E
111 112parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 14first strand
Strand 2
E
33 38parallel
Strand 3
E
61 66parallel
Strand 4
E
93 96parallel
Strand 5
E
117 120parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
213 216first strand
Strand 2
E
225 227anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
246 248first strand
Strand 2
E
252 254anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
278 280first strand
Strand 2
E
283 285anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
292 294first strand
Strand 2
E
301 303anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
311 312first strand
Strand 2
E
335 336parallel
Strand 3
E
363 364parallel
Strand 4
E
387 388parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
320 321first strand
Strand 2
E
341 342parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
370 371first strand
Strand 2
E
402 403parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
479 480first strand
Strand 2
E
485 488anti-parallel
Strand 3
E
550 552anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
532 534first strand
Strand 2
E
503 509anti-parallel
Strand 3
E
561 568anti-parallel
Strand 4
E
586 589anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
6 8first strand
Strand 2
F
26 29parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
13 14first strand
Strand 2
F
33 38parallel
Strand 3
F
61 66parallel
Strand 4
F
93 96parallel
Strand 5
F
117 120parallel
Strand 6
F
144 146parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
56 57first strand
Strand 2
F
81 82parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
231 233first strand
Strand 2
F
236 238anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
252 254first strand
Strand 2
F
246 248anti-parallel
Strand 3
F
283 285parallel
Strand 4
F
278 280anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
292 295first strand
Strand 2
F
300 303anti-parallel
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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
320 321first strand
Strand 2
F
340 342parallel
Strand 3
F
368 369parallel
Strand 4
F
400 402parallel
Strand 5
F
426 428parallel
Strand 6
F
456 457parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
335 336first strand
Strand 2
F
363 364parallel
Strand 3
F
387 388parallel
Strand 4
F
420 421parallel
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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
475 480first strand
Strand 2
F
485 489anti-parallel
Strand 3
F
550 553anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
530 534first strand
Strand 2
F
500 509anti-parallel
Strand 3
F
561 570anti-parallel
Strand 4
F
586 589anti-parallel
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