Analysis of interatomic Contacts of Structural Units in PDB entry:
7YQ5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YQ5 entry

There are 11 chains in PDB entry 7YQ5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1	ASN 21
B	ASN 3	THR 27
G	C 1	C 1
G	A 5	A 5
G	G 7	G 7
G	A 9	A 9
G	C 15	C 15
G	A 17	G 18
G	G 23	G 23
F	PRO 4	ASP 907
E	HIS 1	ASP 907

There are 25 helices in PDB entry 7YQ5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	6	Right-handed alpha
Helix 2	AA2	B	9	18	Right-handed alpha
Helix 3	AA3	F	17	24	Right-handed 310
Helix 4	AA4	F	42	46	Right-handed 310
Helix 5	AA5	F	139	143	Right-handed 310
Helix 6	AA6	F	148	152	Right-handed 310
Helix 7	AA7	F	256	266	Right-handed alpha
Helix 8	AA8	F	323	328	Right-handed alpha
Helix 9	AA9	F	329	331	Right-handed 310
Helix 10	AB1	F	352	358	Right-handed alpha
Helix 11	AB2	F	638	644	Right-handed 310
Helix 12	AB3	F	688	714	Right-handed alpha
Helix 13	AB4	F	809	813	Right-handed 310
Helix 14	AB5	F	863	870	Right-handed alpha
Helix 15	AB6	E	17	24	Right-handed 310
Helix 16	AB7	E	42	46	Right-handed 310
Helix 17	AB8	E	71	75	Right-handed 310
Helix 18	AB9	E	132	137	Right-handed alpha
Helix 19	AC1	E	255	267	Right-handed alpha
Helix 20	AC2	E	314	318	Right-handed 310
Helix 21	AC3	E	354	359	Right-handed alpha
Helix 22	AC4	E	435	446	Right-handed alpha
Helix 23	AC5	E	525	529	Right-handed 310
Helix 24	AC6	E	638	642	Right-handed 310
Helix 25	AC7	E	862	870	Right-handed alpha

There are 29 sheets in PDB entry 7YQ5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	8	first strand
Strand 2	F	26	29	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	14	first strand
Strand 2	F	33	38	parallel
Strand 3	F	61	66	parallel
Strand 4	F	93	96	parallel
Strand 5	F	117	120	parallel
Strand 6	F	144	146	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	56	57	first strand
Strand 2	F	81	82	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	231	233	first strand
Strand 2	F	236	238	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	252	254	first strand
Strand 2	F	246	248	anti-parallel
Strand 3	F	283	285	parallel
Strand 4	F	278	280	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	292	295	first strand
Strand 2	F	300	303	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	320	321	first strand
Strand 2	F	340	342	parallel
Strand 3	F	368	369	parallel
Strand 4	F	400	402	parallel
Strand 5	F	426	428	parallel
Strand 6	F	456	457	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	335	336	first strand
Strand 2	F	363	364	parallel
Strand 3	F	387	388	parallel
Strand 4	F	420	421	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	475	480	first strand
Strand 2	F	485	489	anti-parallel
Strand 3	F	550	553	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	530	534	first strand
Strand 2	F	500	509	anti-parallel
Strand 3	F	561	570	anti-parallel
Strand 4	F	586	589	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	611	614	first strand
Strand 2	F	767	770	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	759	760	first strand
Strand 2	F	627	634	anti-parallel
Strand 3	F	779	786	anti-parallel
Strand 4	F	799	803	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	819	822	first strand
Strand 2	F	828	831	anti-parallel
Strand 3	F	872	874	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	856	862	first strand
Strand 2	F	842	850	anti-parallel
Strand 3	F	883	890	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	8	first strand
Strand 2	E	26	29	parallel
Strand 3	E	56	57	parallel
Strand 4	E	81	82	parallel
Strand 5	E	111	112	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	14	first strand
Strand 2	E	33	38	parallel
Strand 3	E	61	66	parallel
Strand 4	E	93	96	parallel
Strand 5	E	117	120	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	213	216	first strand
Strand 2	E	225	227	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	246	248	first strand
Strand 2	E	252	254	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	278	280	first strand
Strand 2	E	283	285	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	292	294	first strand
Strand 2	E	301	303	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	311	312	first strand
Strand 2	E	335	336	parallel
Strand 3	E	363	364	parallel
Strand 4	E	387	388	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	320	321	first strand
Strand 2	E	341	342	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	370	371	first strand
Strand 2	E	402	403	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	479	480	first strand
Strand 2	E	485	488	anti-parallel
Strand 3	E	550	552	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	532	534	first strand
Strand 2	E	503	509	anti-parallel
Strand 3	E	561	568	anti-parallel
Strand 4	E	586	589	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	599	605	first strand
Strand 2	E	611	616	anti-parallel
Strand 3	E	767	770	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	759	760	first strand
Strand 2	E	627	634	anti-parallel
Strand 3	E	778	786	anti-parallel
Strand 4	E	799	804	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	819	821	first strand
Strand 2	E	827	831	anti-parallel
Strand 3	E	872	875	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	857	861	first strand
Strand 2	E	842	850	anti-parallel
Strand 3	E	880	890	anti-parallel
Strand 4	E	901	905	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YQ5

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YQ5