Analysis of interatomic Contacts of Structural Units in PDB entry:
7YQ8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YQ8 entry

There are 6 chains in PDB entry 7YQ8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 457	VAL 1207
B	LYS 457	VAL 1207
C	G 12	G 23
D	C 24	C 39
E	G 12	T 23
F	T 24	C 39

There are 63 helices in PDB entry 7YQ8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	483	498	Right-handed alpha
Helix 2	AA2	A	513	517	Right-handed 310
Helix 3	AA3	A	518	525	Right-handed alpha
Helix 4	AA4	A	525	536	Right-handed alpha
Helix 5	AA5	A	545	550	Right-handed alpha
Helix 6	AA6	A	564	582	Right-handed alpha
Helix 7	AA7	A	583	589	Right-handed 310
Helix 8	AA8	A	612	621	Right-handed alpha
Helix 9	AA9	A	625	629	Right-handed 310
Helix 10	AB1	A	641	650	Right-handed alpha
Helix 11	AB2	A	663	675	Right-handed alpha
Helix 12	AB3	A	678	700	Right-handed alpha
Helix 13	AB4	A	715	723	Right-handed alpha
Helix 14	AB5	A	723	736	Right-handed alpha
Helix 15	AB6	A	744	758	Right-handed alpha
Helix 16	AB7	A	765	776	Right-handed alpha
Helix 17	AB8	A	781	793	Right-handed alpha
Helix 18	AB9	A	832	839	Right-handed alpha
Helix 19	AC1	A	840	846	Right-handed 310
Helix 20	AC2	A	868	873	Right-handed alpha
Helix 21	AC3	A	889	902	Right-handed alpha
Helix 22	AC4	A	952	966	Right-handed alpha
Helix 23	AC5	A	994	1005	Right-handed alpha
Helix 24	AC6	A	1005	1011	Right-handed alpha
Helix 25	AC7	A	1035	1081	Right-handed alpha
Helix 26	AC8	A	1090	1102	Right-handed alpha
Helix 27	AC9	A	1106	1118	Right-handed alpha
Helix 28	AD1	A	1143	1148	Right-handed alpha
Helix 29	AD2	A	1150	1154	Right-handed 310
Helix 30	AD3	A	1155	1178	Right-handed alpha
Helix 31	AD4	A	1180	1195	Right-handed alpha
Helix 32	AD5	A	1195	1206	Right-handed alpha
Helix 33	AD6	B	472	476	Right-handed 310
Helix 34	AD7	B	483	498	Right-handed alpha
Helix 35	AD8	B	518	525	Right-handed alpha
Helix 36	AD9	B	525	536	Right-handed alpha
Helix 37	AE1	B	545	550	Right-handed alpha
Helix 38	AE2	B	564	582	Right-handed alpha
Helix 39	AE3	B	583	589	Right-handed 310
Helix 40	AE4	B	612	621	Right-handed alpha
Helix 41	AE5	B	625	629	Right-handed 310
Helix 42	AE6	B	641	649	Right-handed alpha
Helix 43	AE7	B	663	675	Right-handed alpha
Helix 44	AE8	B	678	700	Right-handed alpha
Helix 45	AE9	B	715	723	Right-handed alpha
Helix 46	AF1	B	723	736	Right-handed alpha
Helix 47	AF2	B	744	758	Right-handed alpha
Helix 48	AF3	B	765	776	Right-handed alpha
Helix 49	AF4	B	781	793	Right-handed alpha
Helix 50	AF5	B	832	839	Right-handed alpha
Helix 51	AF6	B	840	846	Right-handed 310
Helix 52	AF7	B	868	873	Right-handed alpha
Helix 53	AF8	B	889	902	Right-handed alpha
Helix 54	AF9	B	952	966	Right-handed alpha
Helix 55	AG1	B	994	1005	Right-handed alpha
Helix 56	AG2	B	1005	1011	Right-handed alpha
Helix 57	AG3	B	1035	1081	Right-handed alpha
Helix 58	AG4	B	1090	1102	Right-handed alpha
Helix 59	AG5	B	1106	1118	Right-handed alpha
Helix 60	AG6	B	1150	1154	Right-handed 310
Helix 61	AG7	B	1155	1178	Right-handed alpha
Helix 62	AG8	B	1180	1195	Right-handed alpha
Helix 63	AG9	B	1195	1206	Right-handed alpha

There are 16 sheets in PDB entry 7YQ8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	502	507	first strand
Strand 2	A	477	482	parallel
Strand 3	A	557	560	parallel
Strand 4	A	591	593	parallel
Strand 5	A	657	659	anti-parallel
Strand 6	A	713	714	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	606	610	first strand
Strand 2	A	599	603	anti-parallel
Strand 3	A	630	633	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	763	764	first strand
Strand 2	A	828	829	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	849	851	first strand
Strand 2	A	856	859	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	874	877	first strand
Strand 2	A	882	885	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	919	924	first strand
Strand 2	A	927	931	anti-parallel
Strand 3	A	1013	1017	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	933	938	first strand
Strand 2	A	941	946	anti-parallel
Strand 3	A	989	993	anti-parallel
Strand 4	A	975	980	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1021	1024	first strand
Strand 2	A	1030	1033	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	502	507	first strand
Strand 2	B	477	482	parallel
Strand 3	B	557	560	parallel
Strand 4	B	591	593	parallel
Strand 5	B	657	659	anti-parallel
Strand 6	B	713	714	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	606	610	first strand
Strand 2	B	599	603	anti-parallel
Strand 3	B	630	633	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	763	764	first strand
Strand 2	B	828	831	anti-parallel
Strand 3	B	805	808	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	849	851	first strand
Strand 2	B	856	859	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	874	876	first strand
Strand 2	B	883	885	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	919	924	first strand
Strand 2	B	927	931	anti-parallel
Strand 3	B	1013	1017	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	933	938	first strand
Strand 2	B	941	946	anti-parallel
Strand 3	B	989	993	anti-parallel
Strand 4	B	975	980	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1021	1024	first strand
Strand 2	B	1030	1033	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YQ8

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YQ8