Analysis of interatomic Contacts of Structural Units in PDB entry:
7YQG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YQG entry

There are 2 chains in PDB entry 7YQG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4MET 317
B
 LYS 4MET 317
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 7YQG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 16Right-handed 310
Helix 2
AA2
A
58 62Right-handed 310
Helix 3
AA3
A
241 252Right-handed alpha
Helix 4
AA4
B
12 16Right-handed 310
Helix 5
AA5
B
58 62Right-handed 310
Helix 6
AA6
B
241 252Right-handed alpha
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There are 6 sheets in PDB entry 7YQG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 29first strand
Strand 2
A
216 224anti-parallel
Strand 3
A
235 238anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 29first strand
Strand 2
A
216 224anti-parallel
Strand 3
A
283 287anti-parallel
Strand 4
A
272 279anti-parallel
Strand 5
A
259 265anti-parallel
Strand 6
A
301 308anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 71first strand
Strand 2
A
89 96anti-parallel
Strand 3
A
159 164anti-parallel
Strand 4
A
139 147anti-parallel
Strand 5
A
121 129anti-parallel
Strand 6
A
174 182anti-parallel
Strand 7
A
65 71anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 29first strand
Strand 2
B
216 224anti-parallel
Strand 3
B
235 238anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 29first strand
Strand 2
B
216 224anti-parallel
Strand 3
B
283 287anti-parallel
Strand 4
B
272 279anti-parallel
Strand 5
B
259 265anti-parallel
Strand 6
B
301 308anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 70first strand
Strand 2
B
89 96anti-parallel
Strand 3
B
159 164anti-parallel
Strand 4
B
139 147anti-parallel
Strand 5
B
121 129anti-parallel
Strand 6
B
174 182anti-parallel
Strand 7
B
65 70anti-parallel
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