Analysis of interatomic Contacts of Structural Units in PDB entry:
7YQM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YQM entry

There is 1 chain in PDB entry 7YQM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 723
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 7YQM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 24Right-handed alpha
Helix 2
AA2
A
31 71Right-handed alpha
Helix 3
AA3
A
77 88Right-handed alpha
Helix 4
AA4
A
106 111Right-handed alpha
Helix 5
AA5
A
123 133Right-handed alpha
Helix 6
AA6
A
138 143Right-handed alpha
Helix 7
AA7
A
159 178Right-handed alpha
Helix 8
AA8
A
212 214Right-handed 310
Helix 9
AA9
A
279 296Right-handed alpha
Helix 10
AB1
A
359 378Right-handed alpha
Helix 11
AB2
A
394 414Right-handed alpha
Helix 12
AB3
A
428 433Right-handed alpha
Helix 13
AB4
A
434 440Right-handed alpha
Helix 14
AB5
A
453 464Right-handed alpha
Helix 15
AB6
A
465 468Right-handed 310
Helix 16
AB7
A
472 478Right-handed 310
Helix 17
AB8
A
479 496Right-handed alpha
Helix 18
AB9
A
514 522Right-handed alpha
Helix 19
AC1
A
523 528Right-handed alpha
Helix 20
AC2
A
537 551Right-handed alpha
Helix 21
AC3
A
552 562Right-handed alpha
Helix 22
AC4
A
563 567Right-handed 310
Helix 23
AC5
A
568 577Right-handed alpha
Helix 24
AC6
A
588 613Right-handed alpha
Helix 25
AC7
A
632 648Right-handed alpha
Helix 26
AC8
A
652 671Right-handed alpha
Helix 27
AC9
A
683 686Right-handed 310
Helix 28
AD1
A
687 699Right-handed alpha
Helix 29
AD2
A
700 707Right-handed 310
Helix 30
AD3
A
708 723Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 7YQM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
11 13anti-parallel
Strand 3
A
345 350anti-parallel
Strand 4
A
356 358anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
503 505first strand
Strand 2
A
446 451parallel
Strand 3
A
420 426parallel
Strand 4
A
386 390parallel
Strand 5
A
334 338parallel
Strand 6
A
266 270parallel
Strand 7
A
116 120parallel
Strand 8
A
534 535parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 137first strand
Strand 2
A
256 262anti-parallel
Strand 3
A
236 242anti-parallel
Strand 4
A
226 233anti-parallel
Strand 5
A
216 221anti-parallel
Strand 6
A
317 321anti-parallel
Strand 7
A
326 329anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 194first strand
Strand 2
A
197 202anti-parallel
Strand 3
A
207 208anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 300first strand
Strand 2
A
311 312anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
620 621first strand
Strand 2
A
627 628anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il