Analysis of interatomic Contacts of Structural Units in PDB entry:
7YQP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YQP entry

There is 1 chain in PDB entry 7YQP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 468
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 7YQP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 5Right-handed 310
Helix 2
AA2
A
6 10Right-handed 310
Helix 3
AA3
A
12 17Right-handed alpha
Helix 4
AA4
A
18 22Right-handed 310
Helix 5
AA5
A
47 56Right-handed alpha
Helix 6
AA6
A
61 76Right-handed alpha
Helix 7
AA7
A
80 92Right-handed alpha
Helix 8
AA8
A
126 131Right-handed alpha
Helix 9
AA9
A
131 137Right-handed alpha
Helix 10
AB1
A
138 162Right-handed alpha
Helix 11
AB2
A
165 170Right-handed alpha
Helix 12
AB3
A
184 197Right-handed alpha
Helix 13
AB4
A
204 215Right-handed alpha
Helix 14
AB5
A
263 269Right-handed alpha
Helix 15
AB6
A
279 284Right-handed 310
Helix 16
AB7
A
298 313Right-handed alpha
Helix 17
AB8
A
338 352Right-handed alpha
Helix 18
AB9
A
355 357Right-handed 310
Helix 19
AC1
A
364 369Right-handed alpha
Helix 20
AC2
A
428 430Right-handed 310
Helix 21
AC3
A
455 466Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 7YQP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
390 393first strand
Strand 2
A
378 387anti-parallel
Strand 3
A
26 35anti-parallel
Strand 4
A
113 119anti-parallel
Strand 5
A
97 101anti-parallel
Strand 6
A
442 446anti-parallel
Strand 7
A
449 450anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 44first strand
Strand 2
A
107 109anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 176first strand
Strand 2
A
359 363parallel
Strand 3
A
330 333parallel
Strand 4
A
291 294parallel
Strand 5
A
259 262parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
316 318first strand
Strand 2
A
324 326anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 426first strand
Strand 2
A
411 416anti-parallel
Strand 3
A
437 439anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il