Analysis of interatomic Contacts of Structural Units in PDB entry:
7YQQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YQQ entry

There are 2 chains in PDB entry 7YQQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 468
B
 MET 1LEU 468
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 7YQQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 5Right-handed 310
Helix 2
AA2
A
6 10Right-handed 310
Helix 3
AA3
A
12 17Right-handed alpha
Helix 4
AA4
A
18 22Right-handed 310
Helix 5
AA5
A
47 56Right-handed alpha
Helix 6
AA6
A
61 76Right-handed alpha
Helix 7
AA7
A
80 91Right-handed alpha
Helix 8
AA8
A
126 131Right-handed alpha
Helix 9
AA9
A
131 137Right-handed alpha
Helix 10
AB1
A
138 163Right-handed alpha
Helix 11
AB2
A
165 170Right-handed alpha
Helix 12
AB3
A
178 181Right-handed 310
Helix 13
AB4
A
184 197Right-handed alpha
Helix 14
AB5
A
204 215Right-handed alpha
Helix 15
AB6
A
228 234Right-handed alpha
Helix 16
AB7
A
235 238Right-handed 310
Helix 17
AB8
A
239 252Right-handed alpha
Helix 18
AB9
A
263 273Right-handed alpha
Helix 19
AC1
A
276 287Right-handed alpha
Helix 20
AC2
A
298 315Right-handed alpha
Helix 21
AC3
A
338 352Right-handed alpha
Helix 22
AC4
A
355 357Right-handed 310
Helix 23
AC5
A
364 369Right-handed alpha
Helix 24
AC6
A
428 430Right-handed 310
Helix 25
AC7
A
455 466Right-handed alpha
Helix 26
AC8
B
1 5Right-handed 310
Helix 27
AC9
B
6 10Right-handed 310
Helix 28
AD1
B
12 22Right-handed 310
Helix 29
AD2
B
47 56Right-handed alpha
Helix 30
AD3
B
61 76Right-handed alpha
Helix 31
AD4
B
80 91Right-handed alpha
Helix 32
AD5
B
126 131Right-handed alpha
Helix 33
AD6
B
131 137Right-handed alpha
Helix 34
AD7
B
138 163Right-handed alpha
Helix 35
AD8
B
165 170Right-handed alpha
Helix 36
AD9
B
178 182Right-handed 310
Helix 37
AE1
B
184 197Right-handed alpha
Helix 38
AE2
B
204 215Right-handed alpha
Helix 39
AE3
B
263 273Right-handed alpha
Helix 40
AE4
B
274 287Right-handed alpha
Helix 41
AE5
B
298 315Right-handed alpha
Helix 42
AE6
B
338 352Right-handed alpha
Helix 43
AE7
B
355 357Right-handed 310
Helix 44
AE8
B
364 369Right-handed alpha
Helix 45
AE9
B
428 433Right-handed alpha
Helix 46
AF1
B
455 466Right-handed alpha
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There are 10 sheets in PDB entry 7YQQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
390 393first strand
Strand 2
A
378 387anti-parallel
Strand 3
A
26 35anti-parallel
Strand 4
A
115 119anti-parallel
Strand 5
A
97 101anti-parallel
Strand 6
A
442 446anti-parallel
Strand 7
A
449 450anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 44first strand
Strand 2
A
107 109anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 176first strand
Strand 2
A
359 363parallel
Strand 3
A
329 333parallel
Strand 4
A
289 294parallel
Strand 5
A
257 262parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
316 318first strand
Strand 2
A
324 326anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 426first strand
Strand 2
A
411 416anti-parallel
Strand 3
A
437 439anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
390 393first strand
Strand 2
B
378 387anti-parallel
Strand 3
B
26 35anti-parallel
Strand 4
B
115 119anti-parallel
Strand 5
B
97 101anti-parallel
Strand 6
B
442 446anti-parallel
Strand 7
B
449 450anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 44first strand
Strand 2
B
107 109anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 176first strand
Strand 2
B
359 363parallel
Strand 3
B
329 333parallel
Strand 4
B
289 294parallel
Strand 5
B
257 262parallel
Strand 6
B
226 227parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
316 318first strand
Strand 2
B
324 326anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
422 426first strand
Strand 2
B
411 416anti-parallel
Strand 3
B
437 439anti-parallel
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