Analysis of interatomic Contacts of Structural Units in PDB entry:
7YQZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YQZ entry

There are 7 chains in PDB entry 7YQZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	THR 25	GLU 1144
A	THR 25	GLU 1144
B	THR 25	GLU 1144
I	GLN 1	VAL 123
G	GLU 1	ARG 108
J	GLN 1	VAL 123
H	GLU 1	ARG 108

There are 51 helices in PDB entry 7YQZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	294	303	Right-handed alpha
Helix 2	AA2	C	365	370	Right-handed alpha
Helix 3	AA3	C	384	388	Right-handed 310
Helix 4	AA4	C	406	410	Right-handed 310
Helix 5	AA5	C	737	743	Right-handed alpha
Helix 6	AA6	C	746	755	Right-handed alpha
Helix 7	AA7	C	758	778	Right-handed alpha
Helix 8	AA8	C	816	826	Right-handed alpha
Helix 9	AA9	C	868	881	Right-handed alpha
Helix 10	AB1	C	897	903	Right-handed alpha
Helix 11	AB2	C	916	918	Right-handed 310
Helix 12	AB3	C	919	941	Right-handed alpha
Helix 13	AB4	C	945	965	Right-handed alpha
Helix 14	AB5	C	976	984	Right-handed alpha
Helix 15	AB6	C	985	1032	Right-handed alpha
Helix 16	AB7	A	294	303	Right-handed alpha
Helix 17	AB8	A	337	342	Right-handed alpha
Helix 18	AB9	A	365	370	Right-handed alpha
Helix 19	AC1	A	383	387	Right-handed 310
Helix 20	AC2	A	737	743	Right-handed alpha
Helix 21	AC3	A	748	755	Right-handed alpha
Helix 22	AC4	A	760	781	Right-handed alpha
Helix 23	AC5	A	816	826	Right-handed alpha
Helix 24	AC6	A	868	881	Right-handed alpha
Helix 25	AC7	A	886	890	Right-handed 310
Helix 26	AC8	A	897	910	Right-handed 310
Helix 27	AC9	A	913	918	Right-handed alpha
Helix 28	AD1	A	919	940	Right-handed alpha
Helix 29	AD2	A	945	965	Right-handed alpha
Helix 30	AD3	A	976	984	Right-handed alpha
Helix 31	AD4	A	985	1032	Right-handed alpha
Helix 32	AD5	B	294	303	Right-handed alpha
Helix 33	AD6	B	337	343	Right-handed alpha
Helix 34	AD7	B	738	743	Right-handed alpha
Helix 35	AD8	B	746	754	Right-handed alpha
Helix 36	AD9	B	755	757	Right-handed 310
Helix 37	AE1	B	759	783	Right-handed alpha
Helix 38	AE2	B	816	826	Right-handed alpha
Helix 39	AE3	B	851	855	Right-handed alpha
Helix 40	AE4	B	868	884	Right-handed alpha
Helix 41	AE5	B	886	891	Right-handed alpha
Helix 42	AE6	B	897	903	Right-handed alpha
Helix 43	AE7	B	904	909	Right-handed 310
Helix 44	AE8	B	913	919	Right-handed alpha
Helix 45	AE9	B	919	941	Right-handed alpha
Helix 46	AF1	B	945	965	Right-handed alpha
Helix 47	AF2	B	966	968	Right-handed 310
Helix 48	AF3	B	976	984	Right-handed alpha
Helix 49	AF4	B	985	1032	Right-handed alpha
Helix 50	AF5	I	87	91	Right-handed 310
Helix 51	AF6	J	61	65	Right-handed 310

There are 55 sheets in PDB entry 7YQZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	30	first strand
Strand 2	C	61	65	anti-parallel
Strand 3	C	266	269	anti-parallel
Strand 4	C	90	95	anti-parallel
Strand 5	C	189	195	anti-parallel
Strand 6	C	201	208	anti-parallel
Strand 7	C	224	229	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	A	565	566	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	55	first strand
Strand 2	C	271	279	anti-parallel
Strand 3	C	285	290	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	85	first strand
Strand 2	C	237	241	anti-parallel
Strand 3	C	103	107	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	118	first strand
Strand 2	C	129	131	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	319	first strand
Strand 2	C	592	599	anti-parallel
Strand 3	C	609	613	anti-parallel
Strand 4	C	648	651	anti-parallel
Strand 5	C	642	644	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	324	326	first strand
Strand 2	C	539	543	parallel
Strand 3	C	546	554	anti-parallel
Strand 4	C	585	588	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	355	first strand
Strand 2	C	396	402	anti-parallel
Strand 3	C	508	514	anti-parallel
Strand 4	C	433	437	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	452	454	first strand
Strand 2	C	492	494	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	565	566	first strand
Strand 2	B	42	43	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	654	655	first strand
Strand 2	C	691	695	parallel
Strand 3	C	671	675	anti-parallel
Strand 4	C	664	665	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	702	704	first strand
Strand 2	B	788	790	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	717	719	first strand
Strand 2	C	1059	1071	anti-parallel
Strand 3	C	1047	1050	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	722	728	first strand
Strand 2	C	1059	1071	anti-parallel
Strand 3	C	1054	1056	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1081	1082	first strand
Strand 2	C	1087	1090	anti-parallel
Strand 3	C	1120	1122	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1094	1097	first strand
Strand 2	C	1102	1105	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	30	first strand
Strand 2	A	61	64	anti-parallel
Strand 3	A	266	269	anti-parallel
Strand 4	A	90	94	anti-parallel
Strand 5	A	187	196	anti-parallel
Strand 6	A	201	211	anti-parallel
Strand 7	A	224	229	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	55	first strand
Strand 2	A	271	279	anti-parallel
Strand 3	A	285	290	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	172	first strand
Strand 2	A	126	130	anti-parallel
Strand 3	A	116	121	anti-parallel
Strand 4	A	101	107	anti-parallel
Strand 5	A	239	242	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	319	first strand
Strand 2	A	592	598	anti-parallel
Strand 3	A	609	613	anti-parallel
Strand 4	A	648	651	anti-parallel
Strand 5	A	642	644	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	326	first strand
Strand 2	A	539	543	parallel
Strand 3	A	546	554	anti-parallel
Strand 4	A	585	588	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	356	357	first strand
Strand 2	A	396	402	anti-parallel
Strand 3	A	508	515	anti-parallel
Strand 4	A	430	437	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	454	first strand
Strand 2	A	492	494	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	654	660	first strand
Strand 2	A	691	697	parallel
Strand 3	A	670	675	anti-parallel
Strand 4	A	664	667	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	712	713	first strand
Strand 2	A	1074	1077	anti-parallel
Strand 3	A	1094	1097	anti-parallel
Strand 4	A	1102	1105	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	718	727	first strand
Strand 2	A	1059	1069	anti-parallel
Strand 3	A	1047	1048	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	718	727	first strand
Strand 2	A	1059	1069	anti-parallel
Strand 3	A	1054	1056	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	735	736	first strand
Strand 2	A	858	859	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	788	790	first strand
Strand 2	B	702	704	parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1120	1122	first strand
Strand 2	A	1087	1090	anti-parallel
Strand 3	A	1081	1082	anti-parallel
Strand 4	A	1133	1134	parallel

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There are 8 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	30	first strand
Strand 2	B	61	64	anti-parallel
Strand 3	B	266	269	anti-parallel
Strand 4	B	90	94	anti-parallel
Strand 5	B	189	196	anti-parallel
Strand 6	B	201	208	anti-parallel
Strand 7	B	222	229	anti-parallel
Strand 8	B	36	37	parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	55	first strand
Strand 2	B	271	279	anti-parallel
Strand 3	B	285	290	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	237	242	anti-parallel
Strand 3	B	101	107	anti-parallel
Strand 4	B	116	118	anti-parallel
Strand 5	B	126	131	anti-parallel
Strand 6	B	169	172	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	316	first strand
Strand 2	B	595	599	anti-parallel
Strand 3	B	609	613	anti-parallel
Strand 4	B	648	651	anti-parallel
Strand 5	B	642	644	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	326	first strand
Strand 2	B	538	543	parallel
Strand 3	B	546	554	anti-parallel
Strand 4	B	584	588	anti-parallel
Strand 5	B	575	577	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	379	380	first strand
Strand 2	B	431	437	anti-parallel
Strand 3	B	508	512	anti-parallel
Strand 4	B	399	402	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	454	first strand
Strand 2	B	492	494	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	654	655	first strand
Strand 2	B	691	696	parallel
Strand 3	B	670	675	anti-parallel
Strand 4	B	664	667	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	717	728	first strand
Strand 2	B	1059	1071	anti-parallel
Strand 3	B	1047	1050	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	717	728	first strand
Strand 2	B	1059	1071	anti-parallel
Strand 3	B	1054	1056	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	735	736	first strand
Strand 2	B	858	859	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1120	1122	first strand
Strand 2	B	1087	1090	anti-parallel
Strand 3	B	1081	1082	anti-parallel
Strand 4	B	1133	1134	parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1094	1097	first strand
Strand 2	B	1102	1105	anti-parallel
Strand 3	B	1112	1113	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	6	first strand
Strand 2	I	17	25	anti-parallel
Strand 3	I	78	84	anti-parallel
Strand 4	I	70	73	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	49	51	first strand
Strand 2	I	34	39	anti-parallel
Strand 3	I	93	99	anti-parallel
Strand 4	I	114	117	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	49	51	first strand
Strand 2	I	34	39	anti-parallel
Strand 3	I	93	99	anti-parallel
Strand 4	I	121	122	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	5	first strand
Strand 2	G	24	25	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	19	22	first strand
Strand 2	G	71	76	anti-parallel
Strand 3	G	63	68	anti-parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	46	47	first strand
Strand 2	G	34	39	anti-parallel
Strand 3	G	86	91	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	6	first strand
Strand 2	J	18	25	anti-parallel
Strand 3	J	78	83	anti-parallel
Strand 4	J	70	73	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	49	51	first strand
Strand 2	J	34	39	anti-parallel
Strand 3	J	93	98	anti-parallel
Strand 4	J	116	117	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	49	51	first strand
Strand 2	J	34	39	anti-parallel
Strand 3	J	93	98	anti-parallel
Strand 4	J	121	122	anti-parallel

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There are 4 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	5	first strand
Strand 2	H	19	25	anti-parallel
Strand 3	H	71	76	anti-parallel
Strand 4	H	65	68	anti-parallel

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There are 2 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	103	104	parallel

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There are 2 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	35	39	first strand
Strand 2	H	86	90	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YQZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YQZ