Analysis of interatomic Contacts of Structural Units in PDB entry:
7YR4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YR4 entry

There are 2 chains in PDB entry 7YR4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 19TRP 610
D
 ASN 334LYS 528
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 31 helices in PDB entry 7YR4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 53Right-handed alpha
Helix 2
AA2
A
55 82Right-handed alpha
Helix 3
AA3
A
92 101Right-handed alpha
Helix 4
AA4
A
109 129Right-handed alpha
Helix 5
AA5
A
146 155Right-handed alpha
Helix 6
AA6
A
157 193Right-handed alpha
Helix 7
AA7
A
194 196Right-handed 310
Helix 8
AA8
A
198 205Right-handed alpha
Helix 9
AA9
A
219 252Right-handed alpha
Helix 10
AB1
A
263 267Right-handed 310
Helix 11
AB2
A
275 277Right-handed 310
Helix 12
AB3
A
278 283Right-handed alpha
Helix 13
AB4
A
293 299Right-handed 310
Helix 14
AB5
A
303 319Right-handed alpha
Helix 15
AB6
A
325 331Right-handed alpha
Helix 16
AB7
A
365 385Right-handed alpha
Helix 17
AB8
A
386 388Right-handed 310
Helix 18
AB9
A
400 412Right-handed alpha
Helix 19
AC1
A
414 421Right-handed alpha
Helix 20
AC2
A
435 447Right-handed alpha
Helix 21
AC3
A
448 466Right-handed alpha
Helix 22
AC4
A
474 484Right-handed alpha
Helix 23
AC5
A
499 502Right-handed 310
Helix 24
AC6
A
503 509Right-handed alpha
Helix 25
AC7
A
512 530Right-handed alpha
Helix 26
AC8
A
547 559Right-handed alpha
Helix 27
AC9
A
565 572Right-handed alpha
Helix 28
AD1
A
581 600Right-handed alpha
Helix 29
AD2
D
337 342Right-handed alpha
Helix 30
AD3
D
366 371Right-handed alpha
Helix 31
AD4
D
405 407Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 7YR4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 350first strand
Strand 2
A
356 359anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
356 358first strand
Strand 2
D
394 403anti-parallel
Strand 3
D
507 516anti-parallel
Strand 4
D
433 437anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
452 454first strand
Strand 2
D
492 494anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
473 474first strand
Strand 2
D
488 489anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il