Analysis of interatomic Contacts of Structural Units in PDB entry:
7YR5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YR5 entry

There are 2 chains in PDB entry 7YR5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASN 54LYS 290
A
 ASP 15GLN 452
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 7YR5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
257 290Right-handed alpha
Helix 2
AA2
A
19 40Right-handed alpha
Helix 3
AA3
A
40 51Right-handed alpha
Helix 4
AA4
A
54 72Right-handed alpha
Helix 5
AA5
A
72 83Right-handed alpha
Helix 6
AA6
A
84 104Right-handed alpha
Helix 7
AA7
A
111 139Right-handed alpha
Helix 8
AA8
A
142 152Right-handed alpha
Helix 9
AA9
A
152 162Right-handed alpha
Helix 10
AB1
A
163 172Right-handed alpha
Helix 11
AB2
A
175 188Right-handed alpha
Helix 12
AB3
A
189 194Right-handed alpha
Helix 13
AB4
A
254 259Right-handed 310
Helix 14
AB5
A
260 291Right-handed alpha
Helix 15
AB6
A
294 322Right-handed alpha
Helix 16
AB7
A
323 326Right-handed 310
Helix 17
AB8
A
328 347Right-handed alpha
Helix 18
AB9
A
352 374Right-handed alpha
Helix 19
AC1
A
375 382Right-handed alpha
Helix 20
AC2
A
383 412Right-handed alpha
Helix 21
AC3
A
418 420Right-handed 310
Helix 22
AC4
A
421 448Right-handed alpha
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There are 5 sheets in PDB entry 7YR5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 64first strand
Strand 2
B
86 91parallel
Strand 3
B
122 127anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 74first strand
Strand 2
B
150 154parallel
Strand 3
B
140 144anti-parallel
Strand 4
B
102 105anti-parallel
Strand 5
B
108 110anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 171first strand
Strand 2
B
253 255parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 194first strand
Strand 2
B
235 238anti-parallel
Strand 3
B
248 250anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
210 213first strand
Strand 2
B
221 224anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il