Analysis of interatomic Contacts of Structural Units in PDB entry:
7YR8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YR8 entry

There are 2 chains in PDB entry 7YR8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 20THR 406
R
 U 1 U 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 7YR8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 27Right-handed 310
Helix 2
AA2
A
48 62Right-handed alpha
Helix 3
AA3
A
69 84Right-handed alpha
Helix 4
AA4
A
86 92Right-handed alpha
Helix 5
AA5
A
93 100Right-handed alpha
Helix 6
AA6
A
116 120Right-handed 310
Helix 7
AA7
A
126 137Right-handed alpha
Helix 8
AA8
A
146 156Right-handed alpha
Helix 9
AA9
A
164 182Right-handed alpha
Helix 10
AB1
A
193 207Right-handed alpha
Helix 11
AB2
A
207 221Right-handed alpha
Helix 12
AB3
A
226 239Right-handed alpha
Helix 13
AB4
A
244 253Right-handed alpha
Helix 14
AB5
A
266 269Right-handed 310
Helix 15
AB6
A
270 289Right-handed alpha
Helix 16
AB7
A
293 295Right-handed 310
Helix 17
AB8
A
296 301Right-handed alpha
Helix 18
AB9
A
302 306Right-handed 310
Helix 19
AC1
A
313 326Right-handed alpha
Helix 20
AC2
A
330 334Right-handed 310
Helix 21
AC3
A
340 362Right-handed alpha
Helix 22
AC4
A
369 406Right-handed alpha
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There are 2 sheets in PDB entry 7YR8. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 45first strand
Strand 2
A
104 110parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 257first strand
Strand 2
A
262 264anti-parallel
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