Analysis of interatomic Contacts of Structural Units in PDB entry:
7YRE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YRE entry

There are 8 chains in PDB entry 7YRE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2PHE 56
A
 MET 60LEU 217
B
 ALA 2PHE 56
B
 MET 60LEU 217
C
 ALA 2PHE 56
C
 MET 60LEU 217
D
 ALA 2PHE 56
D
 MET 60LEU 217
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 7YRE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 53Right-handed 310
Helix 2
AA2
A
60 64Right-handed 310
Helix 3
AA3
A
72 77Right-handed alpha
Helix 4
AA4
A
124 129Right-handed alpha
Helix 5
AA5
B
49 53Right-handed 310
Helix 6
AA6
B
60 64Right-handed 310
Helix 7
AA7
B
72 77Right-handed alpha
Helix 8
AA8
B
124 129Right-handed alpha
Helix 9
AA9
C
49 53Right-handed 310
Helix 10
AB1
C
60 64Right-handed 310
Helix 11
AB2
C
72 77Right-handed alpha
Helix 12
AB3
C
124 129Right-handed alpha
Helix 13
AB4
D
49 53Right-handed 310
Helix 14
AB5
D
60 64Right-handed 310
Helix 15
AB6
D
72 77Right-handed alpha
Helix 16
AB7
D
124 129Right-handed alpha
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There are 4 sheets in PDB entry 7YRE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 14first strand
Strand 2
A
17 28anti-parallel
Strand 3
A
33 40anti-parallel
Strand 4
A
206 216anti-parallel
Strand 5
A
188 197anti-parallel
Strand 6
A
137 144anti-parallel
Strand 7
A
147 157anti-parallel
Strand 8
A
165 176anti-parallel
Strand 9
A
82 90anti-parallel
Strand 10
A
95 105anti-parallel
Strand 11
A
108 118anti-parallel
Strand 12
A
4 14parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 14first strand
Strand 2
B
17 28anti-parallel
Strand 3
B
33 40anti-parallel
Strand 4
B
206 216anti-parallel
Strand 5
B
188 197anti-parallel
Strand 6
B
137 144anti-parallel
Strand 7
B
147 157anti-parallel
Strand 8
B
165 176anti-parallel
Strand 9
B
82 90anti-parallel
Strand 10
B
95 104anti-parallel
Strand 11
B
109 118anti-parallel
Strand 12
B
4 14parallel
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There are 13 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
152 157first strand
Strand 2
C
165 176anti-parallel
Strand 3
C
148 149anti-parallel
Strand 4
C
137 143anti-parallel
Strand 5
C
188 197anti-parallel
Strand 6
C
206 216anti-parallel
Strand 7
C
33 40anti-parallel
Strand 8
C
17 28anti-parallel
Strand 9
C
4 14anti-parallel
Strand 10
C
108 118parallel
Strand 11
C
95 105anti-parallel
Strand 12
C
82 90anti-parallel
Strand 13
C
165 176anti-parallel
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There are 13 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
152 157first strand
Strand 2
D
165 176anti-parallel
Strand 3
D
147 149anti-parallel
Strand 4
D
137 144anti-parallel
Strand 5
D
188 197anti-parallel
Strand 6
D
206 216anti-parallel
Strand 7
D
33 40anti-parallel
Strand 8
D
17 28anti-parallel
Strand 9
D
4 14anti-parallel
Strand 10
D
108 118parallel
Strand 11
D
95 105anti-parallel
Strand 12
D
82 90anti-parallel
Strand 13
D
165 176anti-parallel
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