Analysis of interatomic Contacts of Structural Units in PDB entry:
7YRO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YRO entry

There are 8 chains in PDB entry 7YRO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 56	ALA 407
B	PRO 54	ALA 407
C	PRO 54	ALA 409
D	PRO 54	ALA 407
E	PRO 56	ALA 407
F	PRO 56	ALA 407
G	PRO 54	ALA 407
H	PRO 54	ALA 407

There are139 helices in PDB entry 7YRO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	59	71	Right-handed alpha
Helix 2	AA2	A	71	80	Right-handed alpha
Helix 3	AA3	A	123	127	Right-handed 310
Helix 4	AA4	A	133	135	Right-handed 310
Helix 5	AA5	A	233	245	Right-handed alpha
Helix 6	AA6	A	263	269	Right-handed alpha
Helix 7	AA7	A	270	273	Right-handed 310
Helix 8	AA8	A	285	292	Right-handed alpha
Helix 9	AA9	A	309	318	Right-handed alpha
Helix 10	AB1	A	329	333	Right-handed 310
Helix 11	AB2	A	343	345	Right-handed 310
Helix 12	AB3	A	347	360	Right-handed alpha
Helix 13	AB4	A	361	368	Right-handed alpha
Helix 14	AB5	A	369	374	Right-handed alpha
Helix 15	AB6	A	379	386	Right-handed alpha
Helix 16	AB7	A	387	389	Right-handed 310
Helix 17	AB8	A	390	402	Right-handed alpha
Helix 18	AB9	B	59	71	Right-handed alpha
Helix 19	AC1	B	72	80	Right-handed alpha
Helix 20	AC2	B	123	127	Right-handed 310
Helix 21	AC3	B	133	135	Right-handed 310
Helix 22	AC4	B	233	245	Right-handed alpha
Helix 23	AC5	B	264	269	Right-handed alpha
Helix 24	AC6	B	270	273	Right-handed 310
Helix 25	AC7	B	285	291	Right-handed alpha
Helix 26	AC8	B	309	318	Right-handed alpha
Helix 27	AC9	B	329	333	Right-handed 310
Helix 28	AD1	B	343	345	Right-handed 310
Helix 29	AD2	B	347	360	Right-handed alpha
Helix 30	AD3	B	361	368	Right-handed alpha
Helix 31	AD4	B	369	374	Right-handed alpha
Helix 32	AD5	B	379	386	Right-handed alpha
Helix 33	AD6	B	387	389	Right-handed 310
Helix 34	AD7	B	390	403	Right-handed alpha
Helix 35	AD8	C	59	71	Right-handed alpha
Helix 36	AD9	C	71	80	Right-handed alpha
Helix 37	AE1	C	123	127	Right-handed 310
Helix 38	AE2	C	133	135	Right-handed 310
Helix 39	AE3	C	233	245	Right-handed alpha
Helix 40	AE4	C	263	269	Right-handed alpha
Helix 41	AE5	C	270	273	Right-handed 310
Helix 42	AE6	C	285	291	Right-handed alpha
Helix 43	AE7	C	309	318	Right-handed alpha
Helix 44	AE8	C	329	333	Right-handed 310
Helix 45	AE9	C	343	345	Right-handed 310
Helix 46	AF1	C	347	359	Right-handed alpha
Helix 47	AF2	C	361	368	Right-handed alpha
Helix 48	AF3	C	369	374	Right-handed alpha
Helix 49	AF4	C	379	386	Right-handed alpha
Helix 50	AF5	C	387	389	Right-handed 310
Helix 51	AF6	C	390	403	Right-handed alpha
Helix 52	AF7	C	404	407	Right-handed 310
Helix 53	AF8	D	59	71	Right-handed alpha
Helix 54	AF9	D	71	80	Right-handed alpha
Helix 55	AG1	D	123	127	Right-handed 310
Helix 56	AG2	D	133	135	Right-handed 310
Helix 57	AG3	D	233	245	Right-handed alpha
Helix 58	AG4	D	263	269	Right-handed alpha
Helix 59	AG5	D	270	273	Right-handed 310
Helix 60	AG6	D	285	292	Right-handed alpha
Helix 61	AG7	D	309	318	Right-handed alpha
Helix 62	AG8	D	329	333	Right-handed 310
Helix 63	AG9	D	343	345	Right-handed 310
Helix 64	AH1	D	347	360	Right-handed alpha
Helix 65	AH2	D	361	368	Right-handed alpha
Helix 66	AH3	D	369	374	Right-handed alpha
Helix 67	AH4	D	379	386	Right-handed alpha
Helix 68	AH5	D	387	389	Right-handed 310
Helix 69	AH6	D	390	403	Right-handed alpha
Helix 70	AH7	E	59	71	Right-handed alpha
Helix 71	AH8	E	71	80	Right-handed alpha
Helix 72	AH9	E	123	127	Right-handed 310
Helix 73	AI1	E	133	135	Right-handed 310
Helix 74	AI2	E	233	245	Right-handed alpha
Helix 75	AI3	E	263	269	Right-handed alpha
Helix 76	AI4	E	270	273	Right-handed 310
Helix 77	AI5	E	285	291	Right-handed alpha
Helix 78	AI6	E	309	318	Right-handed alpha
Helix 79	AI7	E	329	333	Right-handed 310
Helix 80	AI8	E	343	345	Right-handed 310
Helix 81	AI9	E	347	359	Right-handed alpha
Helix 82	AJ1	E	361	368	Right-handed alpha
Helix 83	AJ2	E	369	374	Right-handed alpha
Helix 84	AJ3	E	379	386	Right-handed alpha
Helix 85	AJ4	E	387	389	Right-handed 310
Helix 86	AJ5	E	390	403	Right-handed alpha
Helix 87	AJ6	F	59	71	Right-handed alpha
Helix 88	AJ7	F	72	80	Right-handed alpha
Helix 89	AJ8	F	123	127	Right-handed 310
Helix 90	AJ9	F	133	135	Right-handed 310
Helix 91	AK1	F	233	245	Right-handed alpha
Helix 92	AK2	F	263	269	Right-handed alpha
Helix 93	AK3	F	270	273	Right-handed 310
Helix 94	AK4	F	285	291	Right-handed alpha
Helix 95	AK5	F	309	318	Right-handed alpha
Helix 96	AK6	F	329	333	Right-handed 310
Helix 97	AK7	F	343	345	Right-handed 310
Helix 98	AK8	F	347	359	Right-handed alpha
Helix 99	AK9	F	361	368	Right-handed alpha
Helix 100	AL1	F	369	374	Right-handed alpha
Helix 101	AL2	F	379	386	Right-handed alpha
Helix 102	AL3	F	387	389	Right-handed 310
Helix 103	AL4	F	390	402	Right-handed alpha
Helix 104	AL5	G	59	71	Right-handed alpha
Helix 105	AL6	G	71	80	Right-handed alpha
Helix 106	AL7	G	123	127	Right-handed 310
Helix 107	AL8	G	133	135	Right-handed 310
Helix 108	AL9	G	233	245	Right-handed alpha
Helix 109	AM1	G	264	269	Right-handed alpha
Helix 110	AM2	G	270	273	Right-handed 310
Helix 111	AM3	G	285	291	Right-handed alpha
Helix 112	AM4	G	309	318	Right-handed alpha
Helix 113	AM5	G	329	333	Right-handed 310
Helix 114	AM6	G	343	345	Right-handed 310
Helix 115	AM7	G	347	360	Right-handed alpha
Helix 116	AM8	G	361	368	Right-handed alpha
Helix 117	AM9	G	369	374	Right-handed alpha
Helix 118	AN1	G	379	386	Right-handed alpha
Helix 119	AN2	G	387	389	Right-handed 310
Helix 120	AN3	G	390	402	Right-handed alpha
Helix 121	AN4	H	59	71	Right-handed alpha
Helix 122	AN5	H	71	80	Right-handed alpha
Helix 123	AN6	H	123	127	Right-handed 310
Helix 124	AN7	H	133	135	Right-handed 310
Helix 125	AN8	H	233	245	Right-handed alpha
Helix 126	AN9	H	264	269	Right-handed alpha
Helix 127	AO1	H	270	273	Right-handed 310
Helix 128	AO2	H	281	284	Right-handed 310
Helix 129	AO3	H	285	291	Right-handed alpha
Helix 130	AO4	H	309	318	Right-handed alpha
Helix 131	AO5	H	329	333	Right-handed 310
Helix 132	AO6	H	343	345	Right-handed 310
Helix 133	AO7	H	347	360	Right-handed alpha
Helix 134	AO8	H	361	368	Right-handed alpha
Helix 135	AO9	H	369	374	Right-handed alpha
Helix 136	AP1	H	379	386	Right-handed alpha
Helix 137	AP2	H	387	389	Right-handed 310
Helix 138	AP3	H	390	402	Right-handed alpha
Helix 139	AP4	H	403	407	Right-handed 310

There are 16 sheets in PDB entry 7YRO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	131	first strand
Strand 2	A	137	141	anti-parallel
Strand 3	A	111	118	parallel
Strand 4	A	152	156	parallel
Strand 5	A	170	174	parallel
Strand 6	A	188	191	parallel
Strand 7	A	198	199	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	251	first strand
Strand 2	A	225	227	parallel
Strand 3	A	295	299	parallel
Strand 4	A	321	325	parallel
Strand 5	A	340	341	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	131	first strand
Strand 2	B	137	141	anti-parallel
Strand 3	B	111	118	parallel
Strand 4	B	152	156	parallel
Strand 5	B	170	174	parallel
Strand 6	B	188	191	parallel
Strand 7	B	198	199	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	251	first strand
Strand 2	B	225	227	parallel
Strand 3	B	295	299	parallel
Strand 4	B	321	325	parallel
Strand 5	B	340	341	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	131	first strand
Strand 2	C	137	141	anti-parallel
Strand 3	C	111	118	parallel
Strand 4	C	152	156	parallel
Strand 5	C	170	174	parallel
Strand 6	C	188	191	parallel
Strand 7	C	198	199	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	249	251	first strand
Strand 2	C	225	227	parallel
Strand 3	C	295	299	parallel
Strand 4	C	321	325	parallel
Strand 5	C	340	341	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	131	first strand
Strand 2	D	137	141	anti-parallel
Strand 3	D	111	118	parallel
Strand 4	D	152	156	parallel
Strand 5	D	170	174	parallel
Strand 6	D	188	191	parallel
Strand 7	D	198	199	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	249	251	first strand
Strand 2	D	225	227	parallel
Strand 3	D	295	299	parallel
Strand 4	D	321	325	parallel
Strand 5	D	340	341	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	128	131	first strand
Strand 2	E	137	141	anti-parallel
Strand 3	E	111	118	parallel
Strand 4	E	152	156	parallel
Strand 5	E	170	174	parallel
Strand 6	E	188	191	parallel
Strand 7	E	198	199	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	249	251	first strand
Strand 2	E	225	227	parallel
Strand 3	E	295	299	parallel
Strand 4	E	321	325	parallel
Strand 5	E	340	341	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	128	131	first strand
Strand 2	F	137	141	anti-parallel
Strand 3	F	111	118	parallel
Strand 4	F	152	156	parallel
Strand 5	F	170	174	parallel
Strand 6	F	188	191	parallel
Strand 7	F	198	199	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	249	251	first strand
Strand 2	F	225	227	parallel
Strand 3	F	295	299	parallel
Strand 4	F	321	325	parallel
Strand 5	F	340	341	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	128	131	first strand
Strand 2	G	137	141	anti-parallel
Strand 3	G	111	118	parallel
Strand 4	G	152	156	parallel
Strand 5	G	170	174	parallel
Strand 6	G	188	191	parallel
Strand 7	G	198	199	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	249	251	first strand
Strand 2	G	225	227	parallel
Strand 3	G	295	299	parallel
Strand 4	G	321	325	parallel
Strand 5	G	340	341	parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	128	131	first strand
Strand 2	H	137	141	anti-parallel
Strand 3	H	111	118	parallel
Strand 4	H	152	156	parallel
Strand 5	H	170	174	parallel
Strand 6	H	188	191	parallel
Strand 7	H	198	199	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	249	251	first strand
Strand 2	H	225	227	parallel
Strand 3	H	295	299	parallel
Strand 4	H	321	325	parallel
Strand 5	H	340	341	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YRO

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YRO