Analysis of interatomic Contacts of Structural Units in PDB entry:
7YRQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YRQ entry

There are 2 chains in PDB entry 7YRQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 66ARG 712
B
 MET 67ARG 712
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 7YRQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
68 83Right-handed alpha
Helix 2
AA2
A
88 100Right-handed alpha
Helix 3
AA3
A
110 124Right-handed alpha
Helix 4
AA4
A
126 175Right-handed alpha
Helix 5
AA5
A
192 199Right-handed alpha
Helix 6
AA6
A
200 217Right-handed alpha
Helix 7
AA7
A
217 237Right-handed alpha
Helix 8
AA8
A
241 247Right-handed alpha
Helix 9
AA9
A
247 259Right-handed alpha
Helix 10
AB1
A
261 289Right-handed alpha
Helix 11
AB2
A
289 297Right-handed alpha
Helix 12
AB3
A
316 323Right-handed alpha
Helix 13
AB4
A
328 337Right-handed alpha
Helix 14
AB5
A
338 353Right-handed alpha
Helix 15
AB6
A
362 372Right-handed alpha
Helix 16
AB7
A
373 378Right-handed alpha
Helix 17
AB8
A
382 404Right-handed alpha
Helix 18
AB9
A
410 430Right-handed alpha
Helix 19
AC1
A
514 521Right-handed alpha
Helix 20
AC2
A
552 557Right-handed alpha
Helix 21
AC3
A
574 583Right-handed alpha
Helix 22
AC4
A
585 591Right-handed 310
Helix 23
AC5
A
606 621Right-handed alpha
Helix 24
AC6
A
638 650Right-handed alpha
Helix 25
AC7
A
661 667Right-handed 310
Helix 26
AC8
A
685 712Right-handed alpha
Helix 27
AC9
B
68 83Right-handed alpha
Helix 28
AD1
B
89 103Right-handed alpha
Helix 29
AD2
B
110 124Right-handed alpha
Helix 30
AD3
B
126 175Right-handed alpha
Helix 31
AD4
B
178 183Right-handed alpha
Helix 32
AD5
B
192 199Right-handed alpha
Helix 33
AD6
B
201 217Right-handed alpha
Helix 34
AD7
B
217 237Right-handed alpha
Helix 35
AD8
B
241 247Right-handed alpha
Helix 36
AD9
B
249 254Right-handed alpha
Helix 37
AE1
B
261 289Right-handed alpha
Helix 38
AE2
B
289 297Right-handed alpha
Helix 39
AE3
B
317 322Right-handed alpha
Helix 40
AE4
B
332 337Right-handed alpha
Helix 41
AE5
B
338 353Right-handed alpha
Helix 42
AE6
B
362 372Right-handed alpha
Helix 43
AE7
B
373 381Right-handed alpha
Helix 44
AE8
B
383 404Right-handed alpha
Helix 45
AE9
B
405 409Right-handed 310
Helix 46
AF1
B
410 430Right-handed alpha
Helix 47
AF2
B
514 521Right-handed alpha
Helix 48
AF3
B
552 557Right-handed alpha
Helix 49
AF4
B
573 583Right-handed alpha
Helix 50
AF5
B
586 591Right-handed 310
Helix 51
AF6
B
606 621Right-handed alpha
Helix 52
AF7
B
638 650Right-handed alpha
Helix 53
AF8
B
660 667Right-handed 310
Helix 54
AF9
B
686 712Right-handed alpha
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There are 5 sheets in PDB entry 7YRQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
468 469first strand
Strand 2
A
530 533parallel
Strand 3
A
474 477anti-parallel
Strand 4
A
494 497anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
481 482first strand
Strand 2
A
488 490anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
504 505first strand
Strand 2
A
655 657parallel
Strand 3
A
627 629parallel
Strand 4
A
541 542parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
467 469first strand
Strand 2
B
530 533parallel
Strand 3
B
474 482anti-parallel
Strand 4
B
488 497anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
504 505first strand
Strand 2
B
655 657parallel
Strand 3
B
627 629parallel
Strand 4
B
541 542parallel
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