Analysis of interatomic Contacts of Structural Units in PDB entry:
7YRY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YRY entry

There are 8 chains in PDB entry 7YRY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 26	TYR 514
B	ALA 26	TYR 514
C	ALA 26	TYR 514
D	SER 2	LEU 464
E	SER 2	LEU 464
F	SER 2	LEU 464
e	ALA 2	GLN 139
g	ALA 2	VAL 289

There are133 helices in PDB entry 7YRY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	79	83	Right-handed 310
Helix 2	AA2	A	101	105	Right-handed 310
Helix 3	AA3	A	151	158	Right-handed alpha
Helix 4	AA4	A	175	186	Right-handed alpha
Helix 5	AA5	A	202	216	Right-handed alpha
Helix 6	AA6	A	217	220	Right-handed 310
Helix 7	AA7	A	232	252	Right-handed alpha
Helix 8	AA8	A	263	278	Right-handed alpha
Helix 9	AA9	A	283	287	Right-handed 310
Helix 10	AB1	A	290	300	Right-handed alpha
Helix 11	AB2	A	306	315	Right-handed alpha
Helix 12	AB3	A	340	348	Right-handed alpha
Helix 13	AB4	A	357	363	Right-handed alpha
Helix 14	AB5	A	378	383	Right-handed 310
Helix 15	AB6	A	384	391	Right-handed alpha
Helix 16	AB7	A	393	408	Right-handed alpha
Helix 17	AB8	A	415	432	Right-handed alpha
Helix 18	AB9	A	441	454	Right-handed alpha
Helix 19	AC1	A	461	463	Right-handed 310
Helix 20	AC2	A	464	480	Right-handed alpha
Helix 21	AC3	A	480	491	Right-handed alpha
Helix 22	AC4	A	494	512	Right-handed alpha
Helix 23	AC5	B	101	105	Right-handed 310
Helix 24	AC6	B	136	140	Right-handed 310
Helix 25	AC7	B	151	158	Right-handed alpha
Helix 26	AC8	B	176	187	Right-handed alpha
Helix 27	AC9	B	202	217	Right-handed alpha
Helix 28	AD1	B	218	220	Right-handed 310
Helix 29	AD2	B	232	252	Right-handed alpha
Helix 30	AD3	B	263	278	Right-handed alpha
Helix 31	AD4	B	283	287	Right-handed 310
Helix 32	AD5	B	290	300	Right-handed alpha
Helix 33	AD6	B	306	315	Right-handed alpha
Helix 34	AD7	B	340	348	Right-handed alpha
Helix 35	AD8	B	357	362	Right-handed alpha
Helix 36	AD9	B	378	383	Right-handed 310
Helix 37	AE1	B	384	404	Right-handed alpha
Helix 38	AE2	B	405	408	Right-handed 310
Helix 39	AE3	B	415	432	Right-handed alpha
Helix 40	AE4	B	441	454	Right-handed alpha
Helix 41	AE5	B	461	463	Right-handed 310
Helix 42	AE6	B	464	480	Right-handed alpha
Helix 43	AE7	B	480	491	Right-handed alpha
Helix 44	AE8	B	494	512	Right-handed alpha
Helix 45	AE9	C	136	140	Right-handed 310
Helix 46	AF1	C	151	158	Right-handed alpha
Helix 47	AF2	C	175	186	Right-handed alpha
Helix 48	AF3	C	202	216	Right-handed alpha
Helix 49	AF4	C	217	220	Right-handed 310
Helix 50	AF5	C	232	252	Right-handed alpha
Helix 51	AF6	C	263	278	Right-handed alpha
Helix 52	AF7	C	283	287	Right-handed 310
Helix 53	AF8	C	290	300	Right-handed alpha
Helix 54	AF9	C	306	315	Right-handed alpha
Helix 55	AG1	C	340	350	Right-handed alpha
Helix 56	AG2	C	357	363	Right-handed alpha
Helix 57	AG3	C	378	383	Right-handed 310
Helix 58	AG4	C	384	403	Right-handed alpha
Helix 59	AG5	C	404	411	Right-handed 310
Helix 60	AG6	C	415	432	Right-handed alpha
Helix 61	AG7	C	441	454	Right-handed alpha
Helix 62	AG8	C	464	480	Right-handed alpha
Helix 63	AG9	C	480	490	Right-handed alpha
Helix 64	AH1	C	494	510	Right-handed alpha
Helix 65	AH2	D	79	83	Right-handed 310
Helix 66	AH3	D	129	136	Right-handed alpha
Helix 67	AH4	D	153	166	Right-handed alpha
Helix 68	AH5	D	167	169	Right-handed 310
Helix 69	AH6	D	181	195	Right-handed alpha
Helix 70	AH7	D	197	199	Right-handed 310
Helix 71	AH8	D	211	231	Right-handed alpha
Helix 72	AH9	D	249	259	Right-handed alpha
Helix 73	AI1	D	260	264	Right-handed 310
Helix 74	AI2	D	275	285	Right-handed alpha
Helix 75	AI3	D	304	307	Right-handed 310
Helix 76	AI4	D	310	317	Right-handed alpha
Helix 77	AI5	D	318	320	Right-handed 310
Helix 78	AI6	D	327	332	Right-handed alpha
Helix 79	AI7	D	350	355	Right-handed alpha
Helix 80	AI8	D	355	382	Right-handed alpha
Helix 81	AI9	D	388	405	Right-handed alpha
Helix 82	AJ1	D	412	417	Right-handed alpha
Helix 83	AJ2	D	424	438	Right-handed alpha
Helix 84	AJ3	D	444	449	Right-handed 310
Helix 85	AJ4	D	453	464	Right-handed alpha
Helix 86	AJ5	E	79	83	Right-handed 310
Helix 87	AJ6	E	129	135	Right-handed alpha
Helix 88	AJ7	E	153	169	Right-handed alpha
Helix 89	AJ8	E	181	194	Right-handed alpha
Helix 90	AJ9	E	195	199	Right-handed 310
Helix 91	AK1	E	211	231	Right-handed alpha
Helix 92	AK2	E	248	263	Right-handed alpha
Helix 93	AK3	E	275	285	Right-handed alpha
Helix 94	AK4	E	303	307	Right-handed 310
Helix 95	AK5	E	310	318	Right-handed alpha
Helix 96	AK6	E	327	333	Right-handed alpha
Helix 97	AK7	E	350	355	Right-handed alpha
Helix 98	AK8	E	355	382	Right-handed alpha
Helix 99	AK9	E	391	405	Right-handed alpha
Helix 100	AL1	E	424	438	Right-handed alpha
Helix 101	AL2	E	444	449	Right-handed 310
Helix 102	AL3	E	453	464	Right-handed alpha
Helix 103	AL4	F	79	83	Right-handed 310
Helix 104	AL5	F	114	118	Right-handed 310
Helix 105	AL6	F	129	136	Right-handed alpha
Helix 106	AL7	F	154	168	Right-handed alpha
Helix 107	AL8	F	181	195	Right-handed alpha
Helix 108	AL9	F	197	201	Right-handed 310
Helix 109	AM1	F	211	217	Right-handed alpha
Helix 110	AM2	F	218	232	Right-handed alpha
Helix 111	AM3	F	234	238	Right-handed 310
Helix 112	AM4	F	248	264	Right-handed alpha
Helix 113	AM5	F	275	285	Right-handed alpha
Helix 114	AM6	F	303	307	Right-handed 310
Helix 115	AM7	F	310	318	Right-handed alpha
Helix 116	AM8	F	327	333	Right-handed alpha
Helix 117	AM9	F	350	355	Right-handed alpha
Helix 118	AN1	F	355	383	Right-handed alpha
Helix 119	AN2	F	389	405	Right-handed alpha
Helix 120	AN3	F	412	417	Right-handed alpha
Helix 121	AN4	F	424	438	Right-handed alpha
Helix 122	AN5	F	444	449	Right-handed 310
Helix 123	AN6	F	453	464	Right-handed alpha
Helix 124	AN7	e	91	125	Right-handed alpha
Helix 125	AN8	e	128	133	Right-handed alpha
Helix 126	AN9	g	3	37	Right-handed alpha
Helix 127	AO1	g	42	60	Right-handed alpha
Helix 128	AO2	g	65	69	Right-handed 310
Helix 129	AO3	g	90	108	Right-handed alpha
Helix 130	AO4	g	119	128	Right-handed alpha
Helix 131	AO5	g	150	161	Right-handed alpha
Helix 132	AO6	g	213	242	Right-handed alpha
Helix 133	AO7	g	244	288	Right-handed alpha

There are 27 sheets in PDB entry 7YRY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	67	first strand
Strand 2	A	52	56	anti-parallel
Strand 3	A	88	95	anti-parallel
Strand 4	A	29	36	anti-parallel
Strand 5	A	39	43	anti-parallel
Strand 6	A	72	76	anti-parallel
Strand 7	A	61	67	anti-parallel
Strand 8	D	4	10	anti-parallel
Strand 9	D	66	69	anti-parallel
Strand 10	D	29	32	anti-parallel
Strand 11	D	38	46	anti-parallel
Strand 12	D	49	54	anti-parallel
Strand 13	D	13	17	anti-parallel
Strand 14	D	4	10	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	100	first strand
Strand 2	A	126	129	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	109	first strand
Strand 2	A	222	228	parallel
Strand 3	A	193	201	parallel
Strand 4	A	256	262	parallel
Strand 5	A	324	332	parallel
Strand 6	A	167	170	parallel
Strand 7	A	352	356	parallel
Strand 8	A	375	376	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	147	first strand
Strand 2	A	160	161	anti-parallel

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There are 14 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	67	first strand
Strand 2	B	52	56	anti-parallel
Strand 3	B	88	95	anti-parallel
Strand 4	B	29	36	anti-parallel
Strand 5	B	39	44	anti-parallel
Strand 6	B	72	76	anti-parallel
Strand 7	B	61	67	anti-parallel
Strand 8	F	4	10	anti-parallel
Strand 9	F	66	69	anti-parallel
Strand 10	F	29	32	anti-parallel
Strand 11	F	38	46	anti-parallel
Strand 12	F	49	55	anti-parallel
Strand 13	F	13	17	anti-parallel
Strand 14	F	4	10	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	100	first strand
Strand 2	B	126	129	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	109	first strand
Strand 2	B	222	228	parallel
Strand 3	B	193	201	parallel
Strand 4	B	257	261	parallel
Strand 5	B	326	327	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	147	first strand
Strand 2	B	160	161	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	330	332	first strand
Strand 2	B	167	170	parallel
Strand 3	B	352	356	parallel
Strand 4	B	369	376	anti-parallel

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There are 14 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	67	first strand
Strand 2	C	53	56	anti-parallel
Strand 3	C	88	91	anti-parallel
Strand 4	C	29	36	anti-parallel
Strand 5	C	39	44	anti-parallel
Strand 6	C	71	76	anti-parallel
Strand 7	C	61	67	anti-parallel
Strand 8	E	4	10	anti-parallel
Strand 9	E	66	69	anti-parallel
Strand 10	E	29	32	anti-parallel
Strand 11	E	38	44	anti-parallel
Strand 12	E	49	54	anti-parallel
Strand 13	E	13	17	anti-parallel
Strand 14	E	4	10	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	100	first strand
Strand 2	C	126	129	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	109	first strand
Strand 2	C	222	228	parallel
Strand 3	C	193	201	parallel
Strand 4	C	256	261	parallel
Strand 5	C	323	332	parallel
Strand 6	C	304	305	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	109	first strand
Strand 2	C	222	228	parallel
Strand 3	C	193	201	parallel
Strand 4	C	256	261	parallel
Strand 5	C	323	332	parallel
Strand 6	C	166	170	parallel
Strand 7	C	352	355	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	147	first strand
Strand 2	C	160	161	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	77	first strand
Strand 2	D	105	107	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	86	87	first strand
Strand 2	D	201	206	parallel
Strand 3	D	172	178	parallel
Strand 4	D	242	247	parallel
Strand 5	D	295	302	parallel
Strand 6	D	143	148	parallel
Strand 7	D	322	325	parallel
Strand 8	D	345	346	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	124	125	first strand
Strand 2	D	138	139	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	75	77	first strand
Strand 2	E	105	107	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	86	87	first strand
Strand 2	E	201	207	parallel
Strand 3	E	173	180	parallel
Strand 4	E	244	246	parallel
Strand 5	E	297	301	parallel
Strand 6	E	143	147	parallel
Strand 7	E	323	324	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	124	125	first strand
Strand 2	E	138	139	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	241	242	first strand
Strand 2	E	294	295	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	75	77	first strand
Strand 2	F	105	107	anti-parallel

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There are 8 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	86	87	first strand
Strand 2	F	202	207	parallel
Strand 3	F	172	180	parallel
Strand 4	F	241	246	parallel
Strand 5	F	294	300	parallel
Strand 6	F	143	146	parallel
Strand 7	F	322	324	parallel
Strand 8	F	345	346	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	17	20	first strand
Strand 2	e	4	10	anti-parallel
Strand 3	e	76	80	parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	31	34	first strand
Strand 2	e	22	26	anti-parallel
Strand 3	e	48	53	anti-parallel
Strand 4	e	59	64	anti-parallel
Strand 5	e	83	84	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	44	45	first strand
Strand 2	e	67	68	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	113	118	first strand
Strand 2	g	76	81	parallel
Strand 3	g	167	174	parallel
Strand 4	g	182	187	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YRY

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YRY