Analysis of interatomic Contacts of Structural Units in PDB entry:
7YS6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YS6 entry

There are 5 chains in PDB entry 7YS6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 31PRO 336
C
 GLU 20ASN 357
D
 THR 6ARG 62
E
 VAL 2LEU 247
B
 GLU 15LEU 394
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 7YS6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 54Right-handed alpha
Helix 2
AA2
A
55 58Right-handed 310
Helix 3
AA3
A
59 61Right-handed 310
Helix 4
AA4
A
62 79Right-handed alpha
Helix 5
AA5
A
79 90Right-handed alpha
Helix 6
AA6
A
95 97Right-handed 310
Helix 7
AA7
A
98 129Right-handed alpha
Helix 8
AA8
A
133 138Right-handed alpha
Helix 9
AA9
A
139 160Right-handed alpha
Helix 10
AB1
A
185 197Right-handed alpha
Helix 11
AB2
A
197 224Right-handed alpha
Helix 12
AB3
A
265 294Right-handed alpha
Helix 13
AB4
A
298 316Right-handed alpha
Helix 14
AB5
A
320 323Right-handed 310
Helix 15
AB6
A
324 335Right-handed alpha
Helix 16
AB7
C
21 42Right-handed alpha
Helix 17
AB8
C
46 51Right-handed alpha
Helix 18
AB9
D
7 24Right-handed alpha
Helix 19
AC1
D
29 44Right-handed alpha
Helix 20
AC2
E
28 32Right-handed 310
Helix 21
AC3
E
87 91Right-handed 310
Helix 22
AC4
B
16 38Right-handed alpha
Helix 23
AC5
B
55 60Right-handed alpha
Helix 24
AC6
B
235 239Right-handed 310
Helix 25
AC7
B
264 278Right-handed alpha
Helix 26
AC8
B
295 300Right-handed alpha
Helix 27
AC9
B
306 311Right-handed alpha
Helix 28
AD1
B
331 351Right-handed alpha
Helix 29
AD2
B
370 391Right-handed alpha
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There are 13 sheets in PDB entry 7YS6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
66 68first strand
Strand 2
C
353 355anti-parallel
Strand 3
C
344 348anti-parallel
Strand 4
C
332 337anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
75 80first strand
Strand 2
C
86 91anti-parallel
Strand 3
C
95 100anti-parallel
Strand 4
C
105 111anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
117 122first strand
Strand 2
C
128 133anti-parallel
Strand 3
C
138 142anti-parallel
Strand 4
C
151 156anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
163 168first strand
Strand 2
C
173 178anti-parallel
Strand 3
C
183 187anti-parallel
Strand 4
C
196 197anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
206 209first strand
Strand 2
C
215 219anti-parallel
Strand 3
C
225 229anti-parallel
Strand 4
C
235 239anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
246 251first strand
Strand 2
C
257 262anti-parallel
Strand 3
C
266 271anti-parallel
Strand 4
C
276 282anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
293 295first strand
Strand 2
C
301 305anti-parallel
Strand 3
C
311 315anti-parallel
Strand 4
C
321 325anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 7first strand
Strand 2
E
20 25anti-parallel
Strand 3
E
78 83anti-parallel
Strand 4
E
68 73anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 12first strand
Strand 2
E
115 119parallel
Strand 3
E
92 99anti-parallel
Strand 4
E
33 39anti-parallel
Strand 5
E
45 51anti-parallel
Strand 6
E
58 60anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 12first strand
Strand 2
E
115 119parallel
Strand 3
E
92 99anti-parallel
Strand 4
E
110 111anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
140 141first strand
Strand 2
E
156 161anti-parallel
Strand 3
E
211 216anti-parallel
Strand 4
E
203 207anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
146 148first strand
Strand 2
E
243 246parallel
Strand 3
E
225 228anti-parallel
Strand 4
E
175 179anti-parallel
Strand 5
E
185 190anti-parallel
Strand 6
E
194 195anti-parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 214first strand
Strand 2
B
217 224anti-parallel
Strand 3
B
40 46parallel
Strand 4
B
243 248parallel
Strand 5
B
287 291parallel
Strand 6
B
359 362parallel
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