Analysis of interatomic Contacts of Structural Units in PDB entry:
7YSE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YSE entry

There are 4 chains in PDB entry 7YSE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 3	ASN 300
B	GLN 2	ASN 300
C	MET 1	LEU 688
D	GLU 3	ALA 41

There are 86 helices in PDB entry 7YSE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	22	Right-handed alpha
Helix 2	AA2	A	37	40	Right-handed 310
Helix 3	AA3	A	41	46	Right-handed alpha
Helix 4	AA4	A	65	68	Right-handed 310
Helix 5	AA5	A	93	106	Right-handed alpha
Helix 6	AA6	A	124	127	Right-handed 310
Helix 7	AA7	A	167	176	Right-handed alpha
Helix 8	AA8	A	179	182	Right-handed 310
Helix 9	AA9	A	195	213	Right-handed alpha
Helix 10	AB1	A	215	235	Right-handed alpha
Helix 11	AB2	A	240	261	Right-handed alpha
Helix 12	AB3	A	265	294	Right-handed alpha
Helix 13	AB4	B	8	22	Right-handed alpha
Helix 14	AB5	B	37	40	Right-handed 310
Helix 15	AB6	B	41	46	Right-handed alpha
Helix 16	AB7	B	65	68	Right-handed 310
Helix 17	AB8	B	93	105	Right-handed alpha
Helix 18	AB9	B	124	127	Right-handed 310
Helix 19	AC1	B	167	176	Right-handed alpha
Helix 20	AC2	B	179	182	Right-handed 310
Helix 21	AC3	B	195	213	Right-handed alpha
Helix 22	AC4	B	215	234	Right-handed alpha
Helix 23	AC5	B	240	261	Right-handed alpha
Helix 24	AC6	B	265	294	Right-handed alpha
Helix 25	AC7	C	16	18	Right-handed 310
Helix 26	AC8	C	19	38	Right-handed alpha
Helix 27	AC9	C	126	141	Right-handed alpha
Helix 28	AD1	C	201	205	Right-handed 310
Helix 29	AD2	C	206	212	Right-handed alpha
Helix 30	AD3	C	218	236	Right-handed alpha
Helix 31	AD4	C	244	253	Right-handed alpha
Helix 32	AD5	C	266	272	Right-handed 310
Helix 33	AD6	C	273	282	Right-handed alpha
Helix 34	AD7	C	311	339	Right-handed alpha
Helix 35	AD8	C	340	349	Right-handed 310
Helix 36	AD9	C	361	380	Right-handed alpha
Helix 37	AE1	C	382	393	Right-handed alpha
Helix 38	AE2	C	394	398	Right-handed 310
Helix 39	AE3	C	399	405	Right-handed alpha
Helix 40	AE4	C	408	421	Right-handed alpha
Helix 41	AE5	C	423	433	Right-handed alpha
Helix 42	AE6	C	446	468	Right-handed alpha
Helix 43	AE7	C	479	494	Right-handed alpha
Helix 44	AE8	C	499	512	Right-handed alpha
Helix 45	AE9	C	513	515	Right-handed 310
Helix 46	AF1	C	519	530	Right-handed alpha
Helix 47	AF2	C	531	538	Right-handed alpha
Helix 48	AF3	C	542	551	Right-handed alpha
Helix 49	AF4	C	556	571	Right-handed alpha
Helix 50	AF5	C	574	592	Right-handed alpha
Helix 51	AF6	C	608	632	Right-handed alpha
Helix 52	AF7	C	633	642	Right-handed alpha
Helix 53	AF8	C	644	655	Right-handed alpha
Helix 54	AF9	C	661	680	Right-handed alpha
Helix 55	AG1	C	684	688	Right-handed 310
Helix 56	AG2	D	19	39	Right-handed alpha
Helix 57	AG3	D	126	140	Right-handed alpha
Helix 58	AG4	D	201	205	Right-handed 310
Helix 59	AG5	D	206	213	Right-handed alpha
Helix 60	AG6	D	218	237	Right-handed alpha
Helix 61	AG7	D	244	253	Right-handed alpha
Helix 62	AG8	D	266	272	Right-handed 310
Helix 63	AG9	D	273	280	Right-handed alpha
Helix 64	AH1	D	312	339	Right-handed alpha
Helix 65	AH2	D	341	351	Right-handed 310
Helix 66	AH3	D	366	378	Right-handed alpha
Helix 67	AH4	D	382	392	Right-handed alpha
Helix 68	AH5	D	395	399	Right-handed 310
Helix 69	AH6	D	408	421	Right-handed alpha
Helix 70	AH7	D	423	433	Right-handed alpha
Helix 71	AH8	D	446	468	Right-handed alpha
Helix 72	AH9	D	479	494	Right-handed alpha
Helix 73	AI1	D	499	512	Right-handed alpha
Helix 74	AI2	D	519	531	Right-handed alpha
Helix 75	AI3	D	532	540	Right-handed alpha
Helix 76	AI4	D	542	550	Right-handed alpha
Helix 77	AI5	D	551	553	Right-handed 310
Helix 78	AI6	D	556	568	Right-handed alpha
Helix 79	AI7	D	568	573	Right-handed alpha
Helix 80	AI8	D	575	592	Right-handed alpha
Helix 81	AI9	D	602	606	Right-handed 310
Helix 82	AJ1	D	608	629	Right-handed alpha
Helix 83	AJ2	D	630	632	Right-handed 310
Helix 84	AJ3	D	633	643	Right-handed alpha
Helix 85	AJ4	D	644	655	Right-handed alpha
Helix 86	AJ5	D	661	680	Right-handed alpha

There are 17 sheets in PDB entry 7YSE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	27	first strand
Strand 2	A	54	63	parallel
Strand 3	A	79	88	anti-parallel
Strand 4	A	154	166	anti-parallel
Strand 5	A	140	151	anti-parallel
Strand 6	A	128	137	anti-parallel
Strand 7	A	114	123	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	188	first strand
Strand 2	A	191	194	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	27	first strand
Strand 2	B	54	63	parallel
Strand 3	B	79	88	anti-parallel
Strand 4	B	161	166	anti-parallel
Strand 5	B	140	151	anti-parallel
Strand 6	B	128	137	anti-parallel
Strand 7	B	114	123	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	27	first strand
Strand 2	B	54	63	parallel
Strand 3	B	79	88	anti-parallel
Strand 4	B	161	166	anti-parallel
Strand 5	B	140	151	anti-parallel
Strand 6	B	154	155	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	188	first strand
Strand 2	B	191	194	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	50	first strand
Strand 2	C	53	61	anti-parallel
Strand 3	C	4	12	anti-parallel
Strand 4	C	161	168	anti-parallel
Strand 5	C	171	172	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	177	first strand
Strand 2	C	180	181	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	187	first strand
Strand 2	C	196	198	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	240	241	first strand
Strand 2	C	288	291	anti-parallel
Strand 3	C	297	305	anti-parallel
Strand 4	C	259	264	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	353	355	first strand
Strand 2	C	359	360	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	50	first strand
Strand 2	D	53	58	anti-parallel
Strand 3	D	6	12	anti-parallel
Strand 4	D	161	168	anti-parallel
Strand 5	D	171	172	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	72	first strand
Strand 2	D	118	119	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	148	149	first strand
Strand 2	D	156	157	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	176	177	first strand
Strand 2	D	180	181	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	185	187	first strand
Strand 2	D	196	198	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	259	263	first strand
Strand 2	D	301	305	anti-parallel
Strand 3	D	288	289	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	353	355	first strand
Strand 2	D	359	360	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YSE

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YSE