Analysis of interatomic Contacts of Structural Units in PDB entry:
7YSJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YSJ entry

There are 4 chains in PDB entry 7YSJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 1	PRO 786
B	GLN 1	PRO 786
C	GLN 1	PRO 786
D	GLN 1	PRO 786

There are 94 helices in PDB entry 7YSJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	34	Right-handed alpha
Helix 2	AA2	A	54	69	Right-handed alpha
Helix 3	AA3	A	78	92	Right-handed alpha
Helix 4	AA4	A	119	134	Right-handed alpha
Helix 5	AA5	A	145	151	Right-handed 310
Helix 6	AA6	A	152	157	Right-handed alpha
Helix 7	AA7	A	158	161	Right-handed 310
Helix 8	AA8	A	177	188	Right-handed alpha
Helix 9	AA9	A	198	213	Right-handed alpha
Helix 10	AB1	A	253	270	Right-handed alpha
Helix 11	AB2	A	284	302	Right-handed alpha
Helix 12	AB3	A	321	332	Right-handed alpha
Helix 13	AB4	A	443	456	Right-handed alpha
Helix 14	AB5	A	481	488	Right-handed alpha
Helix 15	AB6	A	501	506	Right-handed alpha
Helix 16	AB7	A	628	647	Right-handed alpha
Helix 17	AB8	A	669	678	Right-handed alpha
Helix 18	AB9	A	680	696	Right-handed alpha
Helix 19	AC1	A	701	712	Right-handed alpha
Helix 20	AC2	A	720	730	Right-handed alpha
Helix 21	AC3	A	755	770	Right-handed alpha
Helix 22	AC4	A	770	780	Right-handed alpha
Helix 23	AC5	B	18	34	Right-handed alpha
Helix 24	AC6	B	57	69	Right-handed alpha
Helix 25	AC7	B	78	92	Right-handed alpha
Helix 26	AC8	B	119	135	Right-handed alpha
Helix 27	AC9	B	145	150	Right-handed alpha
Helix 28	AD1	B	152	158	Right-handed alpha
Helix 29	AD2	B	159	161	Right-handed 310
Helix 30	AD3	B	178	188	Right-handed alpha
Helix 31	AD4	B	198	212	Right-handed alpha
Helix 32	AD5	B	253	270	Right-handed alpha
Helix 33	AD6	B	285	304	Right-handed alpha
Helix 34	AD7	B	321	332	Right-handed alpha
Helix 35	AD8	B	436	439	Right-handed 310
Helix 36	AD9	B	443	457	Right-handed alpha
Helix 37	AE1	B	480	488	Right-handed alpha
Helix 38	AE2	B	628	646	Right-handed alpha
Helix 39	AE3	B	651	657	Right-handed alpha
Helix 40	AE4	B	669	678	Right-handed alpha
Helix 41	AE5	B	680	691	Right-handed alpha
Helix 42	AE6	B	691	696	Right-handed alpha
Helix 43	AE7	B	701	712	Right-handed alpha
Helix 44	AE8	B	720	728	Right-handed alpha
Helix 45	AE9	B	753	769	Right-handed alpha
Helix 46	AF1	B	770	780	Right-handed alpha
Helix 47	AF2	C	18	33	Right-handed alpha
Helix 48	AF3	C	55	69	Right-handed alpha
Helix 49	AF4	C	81	91	Right-handed alpha
Helix 50	AF5	C	92	94	Right-handed 310
Helix 51	AF6	C	119	135	Right-handed alpha
Helix 52	AF7	C	145	152	Right-handed 310
Helix 53	AF8	C	157	162	Right-handed alpha
Helix 54	AF9	C	174	176	Right-handed 310
Helix 55	AG1	C	177	189	Right-handed alpha
Helix 56	AG2	C	201	212	Right-handed alpha
Helix 57	AG3	C	253	270	Right-handed alpha
Helix 58	AG4	C	284	304	Right-handed alpha
Helix 59	AG5	C	322	332	Right-handed alpha
Helix 60	AG6	C	444	457	Right-handed alpha
Helix 61	AG7	C	481	488	Right-handed alpha
Helix 62	AG8	C	501	506	Right-handed alpha
Helix 63	AG9	C	628	647	Right-handed alpha
Helix 64	AH1	C	651	658	Right-handed alpha
Helix 65	AH2	C	669	678	Right-handed alpha
Helix 66	AH3	C	680	696	Right-handed alpha
Helix 67	AH4	C	701	712	Right-handed alpha
Helix 68	AH5	C	720	730	Right-handed alpha
Helix 69	AH6	C	755	770	Right-handed alpha
Helix 70	AH7	C	771	781	Right-handed alpha
Helix 71	AH8	D	18	34	Right-handed alpha
Helix 72	AH9	D	54	69	Right-handed alpha
Helix 73	AI1	D	78	92	Right-handed alpha
Helix 74	AI2	D	119	134	Right-handed alpha
Helix 75	AI3	D	145	151	Right-handed alpha
Helix 76	AI4	D	152	162	Right-handed alpha
Helix 77	AI5	D	178	188	Right-handed alpha
Helix 78	AI6	D	198	213	Right-handed alpha
Helix 79	AI7	D	253	269	Right-handed alpha
Helix 80	AI8	D	284	304	Right-handed alpha
Helix 81	AI9	D	321	333	Right-handed alpha
Helix 82	AJ1	D	436	439	Right-handed 310
Helix 83	AJ2	D	443	457	Right-handed alpha
Helix 84	AJ3	D	481	489	Right-handed alpha
Helix 85	AJ4	D	501	507	Right-handed 310
Helix 86	AJ5	D	628	644	Right-handed alpha
Helix 87	AJ6	D	651	657	Right-handed alpha
Helix 88	AJ7	D	670	677	Right-handed alpha
Helix 89	AJ8	D	680	692	Right-handed alpha
Helix 90	AJ9	D	693	696	Right-handed 310
Helix 91	AK1	D	701	712	Right-handed alpha
Helix 92	AK2	D	720	730	Right-handed alpha
Helix 93	AK3	D	753	769	Right-handed alpha
Helix 94	AK4	D	770	780	Right-handed alpha

There are 31 sheets in PDB entry 7YSJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	50	first strand
Strand 2	A	2	10	parallel
Strand 3	A	73	74	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	98	first strand
Strand 2	A	113	115	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	170	first strand
Strand 2	A	138	143	parallel
Strand 3	A	192	196	parallel
Strand 4	A	220	223	parallel
Strand 5	A	242	247	parallel
Strand 6	A	356	360	anti-parallel
Strand 7	A	382	387	anti-parallel
Strand 8	A	393	394	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	337	first strand
Strand 2	A	340	342	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	459	464	first strand
Strand 2	A	414	419	parallel
Strand 3	A	493	499	parallel
Strand 4	A	736	748	anti-parallel
Strand 5	A	515	522	anti-parallel
Strand 6	A	714	719	anti-parallel
Strand 7	A	662	666	parallel
Strand 8	A	698	699	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	427	428	first strand
Strand 2	A	441	442	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	50	first strand
Strand 2	B	2	10	parallel
Strand 3	B	73	74	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	B	113	115	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	165	170	first strand
Strand 2	B	138	143	parallel
Strand 3	B	193	196	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	223	first strand
Strand 2	B	242	247	parallel
Strand 3	B	356	360	anti-parallel
Strand 4	B	382	388	anti-parallel
Strand 5	B	392	394	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	335	337	first strand
Strand 2	B	340	344	anti-parallel
Strand 3	B	351	352	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	460	464	first strand
Strand 2	B	415	419	parallel
Strand 3	B	493	494	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	427	428	first strand
Strand 2	B	441	442	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	497	498	first strand
Strand 2	B	746	747	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	663	664	first strand
Strand 2	B	715	719	parallel
Strand 3	B	518	523	anti-parallel
Strand 4	B	739	742	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	51	first strand
Strand 2	C	4	11	parallel
Strand 3	C	73	74	parallel
Strand 4	C	96	98	parallel
Strand 5	C	114	115	parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	170	first strand
Strand 2	C	138	143	parallel
Strand 3	C	192	195	parallel
Strand 4	C	220	223	parallel
Strand 5	C	242	247	parallel
Strand 6	C	356	360	anti-parallel
Strand 7	C	382	388	anti-parallel
Strand 8	C	392	395	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	336	337	first strand
Strand 2	C	340	341	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	410	419	first strand
Strand 2	C	458	464	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	426	428	first strand
Strand 2	C	441	443	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	508	509	first strand
Strand 2	C	749	750	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	516	517	first strand
Strand 2	C	743	744	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	662	664	first strand
Strand 2	C	714	719	parallel
Strand 3	C	519	524	anti-parallel
Strand 4	C	733	736	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	4	first strand
Strand 2	D	42	44	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	7	first strand
Strand 2	D	73	74	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	98	first strand
Strand 2	D	113	115	parallel

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There are 8 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	165	170	first strand
Strand 2	D	138	143	parallel
Strand 3	D	192	195	parallel
Strand 4	D	220	223	parallel
Strand 5	D	242	247	parallel
Strand 6	D	355	360	anti-parallel
Strand 7	D	382	388	anti-parallel
Strand 8	D	392	395	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	335	336	first strand
Strand 2	D	341	344	anti-parallel
Strand 3	D	351	352	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	459	464	first strand
Strand 2	D	414	419	parallel
Strand 3	D	493	500	parallel
Strand 4	D	744	748	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	427	428	first strand
Strand 2	D	441	442	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	662	664	first strand
Strand 2	D	714	719	parallel
Strand 3	D	519	524	anti-parallel
Strand 4	D	733	736	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YSJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YSJ